From 18ca3a38ebbf8de7d715748fe84f4a8429f2e04c Mon Sep 17 00:00:00 2001
From: Louis <louis.lacoste@agroparistech.fr>
Date: Mon, 22 Dec 2025 14:09:39 +0100
Subject: [PATCH] Adding requirements and draft for using sparseBM package

---
 requirements.txt      | 5 +++++
 sparselbm_full_mat.py | 5 +++++
 2 files changed, 10 insertions(+)
 create mode 100644 requirements.txt
 create mode 100644 sparselbm_full_mat.py

diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..9061c02
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,5 @@
+cupy
+sparsebm
+numpy
+pandas
+matplotlib
\ No newline at end of file
diff --git a/sparselbm_full_mat.py b/sparselbm_full_mat.py
new file mode 100644
index 0000000..6f9cae8
--- /dev/null
+++ b/sparselbm_full_mat.py
@@ -0,0 +1,5 @@
+import numpy as np
+import pandas as pd
+
+# Load matrix from csv file
+pd.read_csv("data/otu_matrix.csv.zip", compression="zip", index_col=0).to_numpy()
\ No newline at end of file