diff --git a/analysis_benchmark_lbm_seq.qmd b/analysis_benchmark_lbm_seq.qmd index 27d8f51..cadfcad 100644 --- a/analysis_benchmark_lbm_seq.qmd +++ b/analysis_benchmark_lbm_seq.qmd @@ -11,7 +11,8 @@ library(tidyverse) library(phyloseq) library(biomformat) source("utils.R") -the_data <- import_biom("data/mach/kinetic.biom") + +the_data <- import_biom("data/chaillou/chaillou.biom") per_taxa_networks <- collapse_otu_at_taxo(the_data) otu_df <- sapply(per_taxa_networks, nrow) %>% data.frame() %>% diff --git a/analysis_benchmark_lbm_seq.html b/analysis_benchmark_lbm_seq_kinetic.html similarity index 100% rename from analysis_benchmark_lbm_seq.html rename to analysis_benchmark_lbm_seq_kinetic.html