From 1fc536e0f0db074fb86b8ebd18dfac4faf2ba3e3 Mon Sep 17 00:00:00 2001 From: Louis Date: Mon, 2 Feb 2026 09:33:32 +0100 Subject: [PATCH] Analysing chaillou --- analysis_benchmark_lbm_seq.qmd | 3 ++- ...ark_lbm_seq.html => analysis_benchmark_lbm_seq_kinetic.html | 0 2 files changed, 2 insertions(+), 1 deletion(-) rename analysis_benchmark_lbm_seq.html => analysis_benchmark_lbm_seq_kinetic.html (100%) diff --git a/analysis_benchmark_lbm_seq.qmd b/analysis_benchmark_lbm_seq.qmd index 27d8f51..cadfcad 100644 --- a/analysis_benchmark_lbm_seq.qmd +++ b/analysis_benchmark_lbm_seq.qmd @@ -11,7 +11,8 @@ library(tidyverse) library(phyloseq) library(biomformat) source("utils.R") -the_data <- import_biom("data/mach/kinetic.biom") + +the_data <- import_biom("data/chaillou/chaillou.biom") per_taxa_networks <- collapse_otu_at_taxo(the_data) otu_df <- sapply(per_taxa_networks, nrow) %>% data.frame() %>% diff --git a/analysis_benchmark_lbm_seq.html b/analysis_benchmark_lbm_seq_kinetic.html similarity index 100% rename from analysis_benchmark_lbm_seq.html rename to analysis_benchmark_lbm_seq_kinetic.html