polarolouis/human-microbiome-compendium
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Extracting filewrite and moving libraries

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Louis 2025-10-17 16:48:23 +02:00
parent 5c955a8478
commit 3570b94f49
1 changed files with 4 additions and 4 deletions
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8
load-europe.R
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@ -1,8 +1,8 @@
if (!file.exists("data/hmc-phyloseq-europe.Rds")) {
library(MicroBioMap)
library(phyloseq)
library(mia)
library(MicroBioMap)
library(phyloseq)
library(mia)
if (!file.exists("data/hmc-phyloseq-europe.Rds")) {
cpd <- getCompendium()
cpd_phyloseq <- convertToPhyloseq(x = cpd)
sample_data(cpd_phyloseq)$geo_loc_name |> grepl(pattern = "europe")