diff --git a/multipartite_fungustree.R b/multipartite_fungustree.R index 77079bb..3dd8c5f 100644 --- a/multipartite_fungustree.R +++ b/multipartite_fungustree.R @@ -1,4 +1,5 @@ -library(GREMLINS) # Load the custom GREMLINS +# library(GREMLINS) # Load the custom GREMLINS +devtools::load_all("../GREMLINS/") library(sbm) data(fungusTreeNetwork) @@ -20,7 +21,10 @@ v_distrib <- c("gaussian", "bernoulli") namesFG <- c("Tree", "Fungus") givenclassif <- list(tree_geo_sbm$memberships, fungus_tree_sbm$memberships[["row"]]) -geo_multi_noinit <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = NULL) +geo_multi_noinit <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = NULL, initBM = TRUE, verbose = TRUE) +geo_multi_noinit_nobm <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = NULL, initBM = FALSE, verbose = TRUE) +geo_multi_noinit_nobm_kmin <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = NULL, initBM = FALSE, verbose = TRUE, v_Kmin = c(7, 2)) +geo_multi_noinit_kmin <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = NULL, initBM = TRUE, verbose = TRUE, v_Kmin = c(7, 2)) geo_multi_init <- multipartiteBM(list_Net = list_Net, v_distrib = v_distrib, namesFG = namesFG, givenclassif = givenclassif) dataR6 <- formattingData(list_Net, v_distrib)