diff --git a/merge-lbm-seq.R b/merge-lbm-seq.R index 1ad11f6..5ec6991 100644 --- a/merge-lbm-seq.R +++ b/merge-lbm-seq.R @@ -3,18 +3,22 @@ library(stringr) args <- commandArgs(trailingOnly = TRUE) path <- args[1] -mode <- args[2] + + base_folder <- str_remove(string = path, pattern = "/tmp[0-9]*$") print(base_folder) epoch <- str_extract(string = path, pattern = "(?<=tmp)([0-9]*)") -flist <- list.files(path, pattern = paste0(mode, ".Rds"), full.names = TRUE) +for (mode in c("seq", "para", "notrans")) { + flist <- list.files(path, pattern = paste0(mode, ".Rds"), full.names = TRUE) + if (length(flist) == 0) { + warning("No files corresponding to ", mode, " found.") + next + } + merged_res <- lapply(flist, readRDS) -stopifnot("No files corresponding to mode found." = length(flist) > 0) + names(merged_res) <- paste0("Rank", seq_along(flist) + 1) -merged_res <- lapply(flist, readRDS) - -names(merged_res) <- paste0("Rank", seq_along(flist) + 1) - -saveRDS(merged_res, file.path(base_folder, paste0(mode, "_", epoch, ".Rds"))) + saveRDS(merged_res, file.path(base_folder, paste0(mode, "_", epoch, ".Rds"))) +}