#!/usr/bin/env bash
#$ -V
#$ -cwd
#$ -N benchlbmseq
#$ -m besa
#$ -q long.q
#$ -t 1-12
#$ -pe thread 128
#$ -M louis.lacoste+migale@agroparistech.fr
#$ -o logs/$JOB_NAME
#$ -e logs/$JOB_NAME

# Creating log directory if it doesn't exists
BASE_DIR="/home/$USER/work/human-microbiome-compendium"
LOG_DIR=$(echo "$BASE_DIR/logs")

if [ ! -d "$LOG_DIR" ]; then
    mkdir -p $LOG_DIR
fi

# Finding directory
APPLICATIONS_DIR=$(echo "$BASE_DIR")

echo $APPLICATIONS_DIR

ARGID=$(($SGE_TASK_ID % 3))

case $ARGID in
    0)
    echo -n "Model will be NOTRANS"
    MODE="notrans"
    ;;
    1)
    echo -n "Model will be SEQ"
    MODE="seq"
    ;;
    2)
    echo -n "Model will be PARA"
    MODE="para"
    ;;
esac

Rscript "${APPLICATIONS_DIR}/benchmark_lbm_seq.R" $MODE &>> logs/$JOB_NAME.$SGE_TASK_ID