#!/usr/bin/env bash
#$ -V
#$ -cwd
#$ -N increasing_size
#$ -m besa
#$ -q short.q
#$ -t 1-25
#$ -pe thread 64
#$ -M louis.lacoste+migale@agroparistech.fr
#$ -o logs/$JOB_NAME
#$ -e logs/$JOB_NAME

# Creating log directory if it doesn't exists
BASE_DIR="/home/$USER/work/human-microbiome-compendium"
LOG_DIR=$(echo "$BASE_DIR/logs")

if [ ! -d "$LOG_DIR" ]; then
    mkdir -p $LOG_DIR
fi

# Finding directory
APPLICATIONS_DIR=$(echo "$BASE_DIR")

echo $APPLICATIONS_DIR

MAX_NUMBER=$(($SGE_TASK_ID * 1000))
MIN_NUMBER=$(($((SGE_TASK_ID-1)) * 1000))


echo "Simulation with range $MIN_NUMBER-$MAX_NUMBER"

Rscript "${APPLICATIONS_DIR}/increasing_size_test.R" $MIN_NUMBER $MAX_NUMBER &>> logs/$JOB_NAME.$SGE_TASK_ID