#!/usr/bin/env bash
#$ -V
#$ -cwd
#$ -N bmcorrectsamp
#$ -m besa
#$ -q short.q
#$ -t 1-6
#$ -pe thread 64
#$ -M louis.lacoste+migale@agroparistech.fr
#$ -o logs/$JOB_NAME
#$ -e logs/$JOB_NAME

# Creating log directory if it doesn't exists
BASE_DIR="/home/$USER/work/human-microbiome-compendium"
LOG_DIR=$(echo "$BASE_DIR/logs")

if [ ! -d "$LOG_DIR" ]; then
    mkdir -p $LOG_DIR
fi

# Finding directory
APPLICATIONS_DIR=$(echo "$BASE_DIR")

echo $APPLICATIONS_DIR

ARGID=$(($SGE_TASK_ID % 3))

case $ARGID in
    0)
    echo -n "Model will be Chaillou"
    MODE="chaillou"
    ;;
    1)
    echo -n "Model will be Ravel"
    MODE="ravel"
    ;;
    2)
    echo -n "Model will be Mach"
    MODE="mach"
    ;;
esac

readonly NB_CORES=$(sed -n 's/^#\$ -pe thread \(.*\)/\1/p' -- "$0")


echo -n "Model will be $MODE with $NB_CORES"

Rscript "${APPLICATIONS_DIR}/blockmodels_correct_sampling_effort.R" $MODE &>> logs/$JOB_NAME.$SGE_TASK_ID