# Human Microbium Compendium


This repository will host the code for my PhD work on data from the
Human Microbiome Compendium detailled in Abdill et al. (2025).

The folder `data` contain the networks as edgelists and the projects
metadata.

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Abdill, Richard J., Samantha P. Graham, Vincent Rubinetti, Mansooreh
Ahmadian, Parker Hicks, Ashwin Chetty, Daniel McDonald, et al. 2025.
“Integration of 168,000 Samples Reveals Global Patterns of the Human Gut
Microbiome.” *Cell* 188 (4): 1100–1118.e17.
<https://doi.org/10.1016/j.cell.2024.12.017>.

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