human-microbiome-compendium/easy16s-visu.R

17 lines
420 B
R

if (!requireNamespace("easy16S", quietly = TRUE)) {
# install.packages("remotes")
remotes::install_gitlab(
repo = "migale/easy16S@main",
host = "forgemia.inra.fr"
)
}
library(easy16S)
if (!file.exists("data/hmc-phyloseq-europe.Rds")) {
source("load-europe.R")
} else {
cpd_phyloseq_europe <- readRDS("data/hmc-phyloseq-europe.Rds")
}
easy16S::run_app(physeq = cpd_phyloseq_europe)