32 lines
No EOL
711 B
Bash
32 lines
No EOL
711 B
Bash
#!/usr/bin/env bash
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#$ -V
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#$ -cwd
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#$ -N increasing_size
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#$ -m besa
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#$ -q short.q
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#$ -t 1-25
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#$ -pe thread 64
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#$ -M louis.lacoste+migale@agroparistech.fr
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#$ -o logs/$JOB_NAME
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#$ -e logs/$JOB_NAME
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# Creating log directory if it doesn't exists
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BASE_DIR="/home/$USER/work/human-microbiome-compendium"
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LOG_DIR=$(echo "$BASE_DIR/logs")
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if [ ! -d "$LOG_DIR" ]; then
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mkdir -p $LOG_DIR
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fi
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# Finding directory
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APPLICATIONS_DIR=$(echo "$BASE_DIR")
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echo $APPLICATIONS_DIR
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MAX_NUMBER=$(($SGE_TASK_ID * 1000))
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MIN_NUMBER=$(($((SGE_TASK_ID-1)) * 1000))
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echo "Simulation with range $MIN_NUMBER-$MAX_NUMBER"
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Rscript "${APPLICATIONS_DIR}/increasing_size_test.R" $MIN_NUMBER $MAX_NUMBER &>> logs/$JOB_NAME.$SGE_TASK_ID |