rapport : mode standalone avec includestandalone et symlink vers tikz

This commit is contained in:
Louis Lacoste 2024-07-24 16:31:13 +02:00
parent 9cba77c975
commit 44d14fe02f
29 changed files with 8748 additions and 6252 deletions

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@ -100,7 +100,7 @@ and~\ref{fig:inference-ari-plots}.
\begin{figure}[ht]
\centering
\input{../tikz/simulations/inference/model-proportions.tex}
\includestandalone{tikz/simulations/inference/model-proportions}
\caption{Preferred model proportions over all datasets in function of
$\eps[\alpha]$}
\label{fig:inference-prop-modele-pref}
@ -108,7 +108,7 @@ and~\ref{fig:inference-ari-plots}.
\begin{figure}[H]
\centering
\input{../tikz/simulations/inference/ari-plots}
\includestandalone{tikz/simulations/inference/ari-plots}
\caption{Plot of the ARI quality indicators in function of
$\eps[\alpha]$}
\label{fig:inference-ari-plots}

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@ -58,7 +58,7 @@ $\pi\rho$-colBiSBM.
\begin{figure}[!ht]
\centering
\input{../tikz/simulations/model_selection/eps-pi-rho-preferred.tex}
\includestandalone{tikz/simulations/model_selection/eps-pi-rho-preferred}
\caption{\label{fig:pref_model_func_eps}Plot of model selection proportions
over the different datasets in
function of $\eps[\pi]$ and $\eps[\rho]$}

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@ -61,39 +61,24 @@ and we store the same predictions.
\emph{Area Under the Curve} (AUC) for predicted versus real link values and the
ARI for predicted versus real block memberships.
For the comparison we subtract the metric given by the LBM to the one
given by colBiSBM and denote it $\Delta\mbox{metric}$.
\begin{figure}[ht]
\centering
\input{../tikz/simulations/na_robustness/auc-model}
\caption{$\Delta\mbox{AUC}$ in function of $p_{\texttt{NA}}$. The dashed red
lines indicate the value 0 for which
$\mbox{AUC}_{LBM} = \mbox{AUC}_{colBiSBM}$}
\includestandalone{tikz/simulations/na_robustness/auc-model}
\caption{}
\label{fig:auc-plot}
\end{figure}
\begin{figure}[ht]
\centering
\input{../tikz/simulations/na_robustness/ari-dim-model}
\caption{$\Delta\mbox{ARI}$ in function of $p_{\texttt{NA}}$. The dashed red
lines indicate the value 0 for which
$\mbox{ARI}_{LBM} = \mbox{ARI}_{colBiSBM}$}
\includestandalone{tikz/simulations/na_robustness/ari-dim-model}
\caption{}
\label{fig:ari-dim-plot-na}
\end{figure}
\paragraph{Results}
On figure~\ref{fig:auc-plot} one can see that overall the nested structure seems
to be the one benefitting most from the collection model having generally
slightly higher $\Delta$AUC than the modular one.
But in general it seems that for $\epsilon\in[0.1,0.7]$ there are no clear
differences between LBM and colBiSBM regarding link prediction. For $\epsilon
\in[0.8,0.9]$ this is where the collection model seems to be most effective.
For the ARI, figure~\ref{fig:ari-dim-plot-na} suggests that collection model
does at least as well as LBM and improves nodes memberships recovery for modular
structure starting from $\epsilon = 0.7$. Again, nested structure benefits
of collection model for smaller $\epsilon$ values but those increase in
$\Delta$ARI are also smaller than what can be observed for modular structure.
\clearpage
Figures~\ref{fig:auc-plot} and~\ref{fig:ari-dim-plot-na} show a
box plot named \enquote{sep-$model$} that
corresponds to the results given by a LBM fitted on data generated with the
corresponding \emph{model}. These sep box plots are there to serve as a baseline
to compare model by model.

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@ -3,11 +3,11 @@
\label{sec:network-clustering-of-simulated-networks}
\paragraph{Simulation settings} For all models we simulate $M = 9$ networks
with~$\forall m \in \{ 1 \dots M \} , n^m_1 = n^m_2 = 75$ with $Q_1 = Q_2 = 3$.\newline
For the simulations the proportions are the following:
\begin{align*}
\bm{\pi}^1 = \left( 0.2, 0.3, 0.5 \right) & & \bm{\rho}^1 = \left( 0.2, 0.3, 0.5 \right) \\
\end{align*} and for all $m = 2,\dots,9$
with~$\forall m \in \{ 1 \dots M \} , n^m_1 = n^m_2 = 75$ with $Q_1 =
Q_2 = 3$.\newline
For the simulations the proportions are the following:\newline
$\bm{\pi}^1 = \left( 0.2, 0.3, 0.5 \right),
~\bm{\rho}^1 = \left( 0.2, 0.3, 0.5 \right)$ and for all $m = 2,\dots,9$
\begin{align*}
\bm{\pi}^m = \begin{cases}
\bm{\pi}^1 & \text{for } iid\text{-colBiSBM} \\
@ -54,7 +54,7 @@ Increasing $\epsilon$ differentiates the 3 sub-collections of networks.
% ARI boxplot
\begin{figure}[H]
\centering
\input{../tikz/simulations/clustering/ari-clustering.tex}
\includestandalone{tikz/simulations/clustering/ari-clustering.tex}
\caption{ARI obtained for the clustering with the different models in
function of $\epsilon$}
\label{fig:ari-clustering-boxplot}

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@ -11,22 +11,22 @@ networks in four major english cities.
\begin{figure}[ht]
\centering
\begin{subfigure}[htb]{0.47\textwidth}
\input{../tikz/applications/baldock/graph-Baldock2019_Bristol.tex}
\includestandalone{tikz/applications/baldock/graph-Baldock2019_Bristol}
\caption{Bristol}
\end{subfigure}
\hfill
\begin{subfigure}[htb]{0.47\textwidth}
\input{../tikz/applications/baldock/graph-Baldock2019_Edinburgh.tex}
\includestandalone{tikz/applications/baldock/graph-Baldock2019_Edinburgh}
\caption{Edinburgh}
\end{subfigure}
\newline
\begin{subfigure}[htb]{0.47\textwidth}
\input{../tikz/applications/baldock/graph-Baldock2019_Leeds.tex}
\includestandalone{tikz/applications/baldock/graph-Baldock2019_Leeds}
\caption{Leeds}
\end{subfigure}
\hfill
\begin{subfigure}[htb]{0.47\textwidth}
\input{../tikz/applications/baldock/graph-Baldock2019_Reading.tex}
\includestandalone{tikz/applications/baldock/graph-Baldock2019_Reading}
\caption{Reading}
\end{subfigure}
\caption{English networks from~\cite{baldockSystemsApproachReveals2019a}}
@ -35,7 +35,7 @@ networks in four major english cities.
\begin{figure}[ht]
\centering
\input{../tikz/applications/baldock/graph-Baldock2011_TB+Baldock2011_JN.tex}
\includestandalone{tikz/applications/baldock/graph-Baldock2011_TB+Baldock2011_JN}
\caption{South African network from~\cite{baldockDailyTemporalStructure2011}}
\label{fig:baldock-south-african-networks}
\end{figure}

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@ -87,6 +87,8 @@
arrows,shapes,positioning,shadows,trees,calc,backgrounds,
automata,positioning}
\usepackage[mode=buildnew]{standalone}
\tikzset{
basic/.style = {draw, text width=3cm, font=\sffamily, rectangle},
root/.style = {basic, rounded corners=2pt, thin, align=center,

1
rapport/tikz Symbolic link
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@ -0,0 +1 @@
../tikz/

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@ -1,5 +1,14 @@
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% Created by tikzDevice version 0.12.6 on 2024-07-24 15:53:00
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
\setlength\PreviewBorder{0pt}
\begin{document}
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\definecolor{fillColor}{RGB}{255,255,255}
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@ -22192,3 +22201,5 @@
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\end{scope}
\end{tikzpicture}
\end{document}

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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-23 22:26:14
% Created by tikzDevice version 0.12.6 on 2024-07-24 15:53:02
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
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@ -67652,3 +67661,5 @@
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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-23 22:26:15
% Created by tikzDevice version 0.12.6 on 2024-07-24 15:53:02
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
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@ -43501,3 +43510,5 @@
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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-23 22:26:15
% Created by tikzDevice version 0.12.6 on 2024-07-24 15:53:03
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
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@ -58477,3 +58486,5 @@
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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-23 22:26:15
% Created by tikzDevice version 0.12.6 on 2024-07-24 15:53:03
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
\setlength\PreviewBorder{0pt}
\begin{document}
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@ -58664,3 +58673,5 @@
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\end{scope}
\end{tikzpicture}
\end{document}

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@ -1,5 +1,14 @@
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% !TEX encoding = UTF-8 Unicode
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\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (214.82,203.10) --
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (214.82,203.10) --
(214.82,203.10) --
(217.48,203.10) --
(214.82,203.10) --
@ -412,7 +424,7 @@
cycle;
\path[draw=drawColor,line width= 1.1pt] (217.48,203.10) -- (222.80,203.10);
\definecolor{fillColor}{gray}{0.20}
\definecolor{fillColor}{RGB}{0,114,178}
\path[draw=drawColor,line width= 0.4pt,line join=round,line cap=round,fill=fillColor] (283.16, 44.03) circle ( 1.96);
@ -421,7 +433,7 @@
\path[draw=drawColor,line width= 0.6pt,line join=round] (283.16,203.10) -- (283.16,203.10);
\definecolor{fillColor}{RGB}{0,114,178}
\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (277.85,203.10) --
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (277.85,203.10) --
(277.85,203.10) --
(280.50,203.10) --
(277.85,203.10) --
@ -482,7 +494,7 @@
\end{scope}
\begin{scope}
\path[clip] ( 0.00, 0.00) rectangle (361.35,216.81);
\definecolor{drawColor}{gray}{0.20}
\definecolor{drawColor}{RGB}{86,180,233}
\path[draw=drawColor,line width= 0.6pt] (326.98,129.29) --
(326.98,131.46);
@ -491,14 +503,14 @@
(326.98,140.85);
\definecolor{fillColor}{RGB}{86,180,233}
\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (321.56,131.46) rectangle (332.40,138.69);
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (321.56,131.46) rectangle (332.40,138.69);
\path[draw=drawColor,line width= 0.6pt] (321.56,135.07) --
(332.40,135.07);
\end{scope}
\begin{scope}
\path[clip] ( 0.00, 0.00) rectangle (361.35,216.81);
\definecolor{drawColor}{gray}{0.20}
\definecolor{drawColor}{RGB}{0,158,115}
\path[draw=drawColor,line width= 0.6pt] (326.98,114.84) --
(326.98,117.00);
@ -507,14 +519,14 @@
(326.98,126.40);
\definecolor{fillColor}{RGB}{0,158,115}
\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (321.56,117.00) rectangle (332.40,124.23);
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (321.56,117.00) rectangle (332.40,124.23);
\path[draw=drawColor,line width= 0.6pt] (321.56,120.62) --
(332.40,120.62);
\end{scope}
\begin{scope}
\path[clip] ( 0.00, 0.00) rectangle (361.35,216.81);
\definecolor{drawColor}{gray}{0.20}
\definecolor{drawColor}{RGB}{240,228,66}
\path[draw=drawColor,line width= 0.6pt] (326.98,100.38) --
(326.98,102.55);
@ -523,14 +535,14 @@
(326.98,111.95);
\definecolor{fillColor}{RGB}{240,228,66}
\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (321.56,102.55) rectangle (332.40,109.78);
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (321.56,102.55) rectangle (332.40,109.78);
\path[draw=drawColor,line width= 0.6pt] (321.56,106.16) --
(332.40,106.16);
\end{scope}
\begin{scope}
\path[clip] ( 0.00, 0.00) rectangle (361.35,216.81);
\definecolor{drawColor}{gray}{0.20}
\definecolor{drawColor}{RGB}{0,114,178}
\path[draw=drawColor,line width= 0.6pt] (326.98, 85.93) --
(326.98, 88.10);
@ -539,7 +551,7 @@
(326.98, 97.49);
\definecolor{fillColor}{RGB}{0,114,178}
\path[draw=drawColor,line width= 0.6pt,fill=fillColor] (321.56, 88.10) rectangle (332.40, 95.32);
\path[draw=drawColor,line width= 0.6pt,fill=fillColor,fill opacity=0.50] (321.56, 88.10) rectangle (332.40, 95.32);
\path[draw=drawColor,line width= 0.6pt] (321.56, 91.71) --
(332.40, 91.71);
@ -569,3 +581,5 @@
\node[text=drawColor,anchor=base west,inner sep=0pt, outer sep=0pt, scale= 0.88] at (339.71, 88.68) {$\pi\rho$};
\end{scope}
\end{tikzpicture}
\end{document}

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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-22 16:03:02
% Created by tikzDevice version 0.12.6 on 2024-07-24 16:13:25
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
\setlength\PreviewBorder{0pt}
\begin{document}
\begin{tikzpicture}[x=1pt,y=1pt]
\definecolor{fillColor}{RGB}{255,255,255}
\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (433.62,361.35);
@ -2250,3 +2259,5 @@
\node[text=drawColor,anchor=base west,inner sep=0pt, outer sep=0pt, scale= 0.88] at (398.67,149.83) {$\pi\rho$};
\end{scope}
\end{tikzpicture}
\end{document}

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@ -1,5 +1,14 @@
% Created by tikzDevice version 0.12.6 on 2024-07-22 16:02:47
% Created by tikzDevice version 0.12.6 on 2024-07-24 16:13:10
% !TEX encoding = UTF-8 Unicode
\documentclass[10pt]{standalone}\usepackage{tikz}
\usepackage[active,tightpage,psfixbb]{preview}
\PreviewEnvironment{pgfpicture}
\setlength\PreviewBorder{0pt}
\begin{document}
\begin{tikzpicture}[x=1pt,y=1pt]
\definecolor{fillColor}{RGB}{255,255,255}
\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (289.08,216.81);
@ -307,3 +316,5 @@
\node[text=drawColor,anchor=base west,inner sep=0pt, outer sep=0pt, scale= 0.88] at (253.84, 85.84) {$\pi\rho$};
\end{scope}
\end{tikzpicture}
\end{document}

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