rapport : template phd marche !
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img/logo/APT_Logo_RVB_Positif.svg
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img/logo/APT_Logo_RVB_Positif.svg
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img/logo/X-IPparis-RVB.eps
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img/logo/X-IPparis-RVB.eps
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\addtocounter{customchapter}{1}
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\chapter{L'UMR MIA Paris-Saclay}
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\chapter{L'UMR MIA Paris-Saclay}
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L'UMR MIA Paris-Saclay est une entité de recherche qui regroupe des
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L'UMR MIA Paris-Saclay est une entité de recherche qui regroupe des
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@ -39,7 +40,7 @@ La figure \ref{fig:organigramme-umr} présente l'organigramme complet de l'unit
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\begin{sidewaysfigure}[h!]
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\begin{sidewaysfigure}[h!]
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\begin{center}
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\begin{center}
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% \includegraphics[scale=0.4]{img/Organigramme_MIA-Paris-Saclay}
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% \includegraphics[scale=0.4]{img/Organigramme_MIA-Paris-Saclay}
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\includegraphics[scale=0.3]{Organigramme_MIA-Paris-Saclay_GS 06-2024.jpg}
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\includegraphics[scale=0.45]{Organigramme_MIA-Paris-Saclay_GS 06-2024.jpg}
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\caption{Organigramme de l'UMR}
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\caption{Organigramme de l'UMR}
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\label{fig:organigramme-umr}
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\label{fig:organigramme-umr}
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\end{center}
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\end{center}
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\addtocounter{customchapter}{1}
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\chapter{Context of the study}
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\chapter{Context of the study}
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\section{Usage and importance of bipartite graphs}\label{sec:usage-and-importance-of-bipartite-graphs}
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\section{Usage and importance of bipartite graphs}\label{sec:usage-and-importance-of-bipartite-graphs}
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\addtocounter{customchapter}{1}
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\chapter[Structure detection in bipartite collection]{Structure detection in a collection of bipartite networks}
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\chapter[Structure detection in bipartite collection]{Structure detection in a collection of bipartite networks}
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\section{Definition of a collection}
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\section{Definition of a collection}
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\label{sec:definition-of-a-collection}
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\label{sec:definition-of-a-collection}
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\addtocounter{customchapter}{1}
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\chapter{Simulation studies}\label{chap:simulation-studies}
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\chapter{Simulation studies}\label{chap:simulation-studies}
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The below simulations are meant to test the capacities of our models. We assess
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The below simulations are meant to test the capacities of our models. We assess
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rapport/page-garde.tex
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rapport/page-garde.tex
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\begin{titlepage}
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%\thispagestyle{empty}
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\newgeometry{left=7.5cm,bottom=2cm, top=1cm, right=1cm}
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% \tikz[remember picture,overlay] \node[opacity=1,inner sep=0pt] at (-28mm,-135mm){\includegraphics{Bandeau_UPaS.pdf}};
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% fonte sans empattement pour la page de titre
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\fontfamily{fvs}\fontseries{m}\selectfont
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%*****************************************************
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%** LOGO ÉTABLISSEMENT PARTENAIRE SI COTUTELLE
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%** CHANGER L'IMAGE PAR DÉFAUT **
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%*****************************************************
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\vspace{-10mm} % à ajuster en fonction de la hauteur du logo
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\flushright\includesvg[scale=0.3]{logo/APT_Logo_RVB_Positif.svg}
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\flushright\includegraphics[scale=0.3]{logo/X-IPparis-RVB.eps}
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%*****************************************************
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%******************** TITRE **************************
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%*****************************************************
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\flushright
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\vspace{10mm} % à régler éventuellement
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\color{pruneps}
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\fontfamily{fvs}\fontseries{m}\fontsize{22}{26}\selectfont
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\thetitle
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%*****************************************************
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%\fontfamily{fvs}\fontseries{m}\fontsize{8}{12}\selectfont
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\normalsize
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\vspace{1.5cm}
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\color{black}
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\textbf{Stage de M2 Mathématiques pour les Sciences du vivant}
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\vspace{15mm}
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\footnotesize Unité de recherche: Math\'ematiques et informatique appliqu\'ees \\(AgroParisTech), UMR 518 INRAE\\
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\footnotesize Référent: Camille Coron\\
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\vspace{15mm}
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\textbf{par}\\
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\bigskip
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\Large {\color{pruneps} \textbf{\theauthor}}
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%************************************
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\vspace{\fill} % ALIGNER LE TABLEAU EN BAS DE PAGE
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%************************************
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\flushleft \small \textbf{Encadrement du stage :}
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\bigskip
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\scriptsize
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\begin{tabular}{|p{8cm}l}\arrayrulecolor{pruneps}
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\textbf{Pierre Barbillon} & Co-encadrant \\
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\textbf{Sophie Donnet} & Co-encadrante
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% \textbf{Prénom Nom} & Coencadrante\\
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% Titre, Affiliation & \\
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% \textbf{Prénom Nom} & Invité \\
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% Titre, Affiliation & \\
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\end{tabular}
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\end{titlepage}
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\usepackage{url} % pour une gestion efficace des url
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\usepackage{url} % pour une gestion efficace des url
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\usepackage[citecolor=blueind,urlcolor=blueps,bookmarks=false,hypertexnames=true]{hyperref} % pour les hyperliens dans le document
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\usepackage[citecolor=blueind,urlcolor=blueps,bookmarks=false,hypertexnames=true]{hyperref} % pour les hyperliens dans le document
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\usepackage{tocbibind} % Pour avoir des index pour table des matières, biblio
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\usepackage{tocbibind} % Pour avoir des index pour table des matières, biblio
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\usepackage{geometry}
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\usepackage{tikz} % For graph plots
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\usepackage{tikz} % For graph plots
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\usepackage[outline]{contour}
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\usepackage[outline]{contour}
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\usepackage[super]{nth}
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\usepackage[super]{nth}
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\usepackage{caption} % Figures
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\usepackage{caption} % Figures
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\usepackage{subcaption} % And Subfigures
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\usepackage{subcaption} % And Subfigures
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\usepackage{longtable}
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\usepackage{longtable}
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\usepackage{colortbl}
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\usepackage{titling}
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\usepackage{rotating} % For allowing to rotate figures
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\usepackage{rotating} % For allowing to rotate figures
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\usepackage{svg} % To allow svg inclusions
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\usepackage{svg} % To allow svg inclusions
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\usepackage{float} % To allow Pandoc to control figure placement
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\usepackage{float} % To allow Pandoc to control figure placement
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@ -86,40 +95,133 @@ automata,positioning}
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% Bibliographie
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% Bibliographie
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\input{../shared/biblio}
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\input{../shared/biblio}
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\newcounter{customchapter}
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\newcounter{maincontentend}
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% Important : modifie ici le nombre de chapitres que tu as.
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% A savoir que cela correspond aux nombres de labels du bandeau sur le côté.
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% Le bandeau est automatiquement mis à jour pour correspondre à la valeur de la
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% variable customchapter, avec 0 = pas de label.
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\newcommand\ChapNum{5}
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%%%%%% Debut code onglets
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\usepackage{background}
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\usepackage{changepage}
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\usepackage{sectsty}
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\newcommand\DeactivateBG{\backgroundsetup{contents={}}}
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\newcommand\ActivateBG{\backgroundsetup{
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scale=1,
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angle=0,
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opacity=0.5,
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contents={
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\ifnum\value{maincontentend}=0
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\checkoddpage
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\ifoddpage
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\begin{tikzpicture}[remember picture,overlay]
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\node[rotate=90,minimum width=\paperheight,minimum height=0.5cm,fill=gray!40,font=\large\bfseries,text=white,anchor=south west] at ($(current page.south east)$) {};
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\node[rotate=90,minimum width=1/\ChapNum*\paperheight,minimum height=0.5cm,fill=\BoxColor,font=\large\bfseries,text=white,anchor=south west] at ([yshift=(\ChapNum-\thecustomchapter)/\ChapNum*\paperheight]$(current page.south east)$) {\chaptername~\thechapter};
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\end{tikzpicture}
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\else
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\begin{tikzpicture}[remember picture,overlay]
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\node[rotate=90,minimum width=\paperheight,minimum height=0.5cm,fill=gray!40,font=\large\bfseries,text=white,anchor=south west] at ([xshift=-\paperwidth+0.5cm]$(current page.south east)$) {};
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\node[rotate=270,minimum width=1/\ChapNum*\paperheight,minimum height=0.5cm,fill=\BoxColor,font=\large\bfseries,text=white,anchor=south west] at ([yshift=(\ChapNum-\thecustomchapter+1)/\ChapNum*\paperheight,xshift=-\paperwidth]$(current page.south east)$) {\chaptername~\thechapter};
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\end{tikzpicture}
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\fi
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\fi
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}
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}
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}
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\definecolor{bleuvert}{RGB}{102, 255, 204}
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\definecolor{greenAgro}{HTML}{028887}
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\newcommand\BoxColor{%
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\ifcase\thecustomchapter greenAgro!40!black\or green!40!black\or blue!40!black\or orange!70!black\or violet!60!black\or teal!60!black\or red!40!black\or blue!40!black\else greenAgro!40!black
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\fi}
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% \newcommand\ChapterTitle{%
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% \ifcase\thecustomchapter {\thechapter} \else {}
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% \fi
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% }
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\sectionfont{\color{\BoxColor}}
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\subsectionfont{\color{\BoxColor}}
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\subsubsectionfont{\color{\BoxColor}}
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%%%% End onglets
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%%%%%%%%%%%%%% En-tête de chapitre %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\makeatletter
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\def\thickhrulefill{\leavevmode \leaders \hrule height 1ex \hfill \kern \z@}
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\def\@makechapterhead#1{%
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\vspace*{-30\p@}%
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{
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\parindent \z@ \raggedleft \reset@font
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\scshape
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\color{\BoxColor}{\@chapapp{} {\fontsize{100pt}{12pt}\selectfont{\textbf{\thechapter}}}}
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\par\nobreak
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\interlinepenalty\@M
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\Huge \bfseries {\color{\BoxColor}{#1}}\par\nobreak
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\vspace*{-20\p@}%
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{\color{\BoxColor}\hrulefill}
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\par\nobreak
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\vskip 10\p@
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}}
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\def\@makeschapterhead#1{%
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\vspace*{-30\p@}%
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{
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\parindent \z@ \raggedleft \reset@font
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\scshape \vphantom{\@chapapp{} \thechapter}
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\par\nobreak
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\interlinepenalty\@M
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\Huge \bfseries {\color{\BoxColor}{#1}}\par\nobreak
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\vspace*{-20\p@}%
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\hrulefill
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\par\nobreak
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\vskip 10\p@
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}}
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\makeatother
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% Nouvelles commandes
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% Nouvelles commandes
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\newcommand{\Tau}{\mathcal{T}}
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\newcommand{\Tau}{\mathcal{T}}
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\newcommand{\eps}[1][]{\ensuremath{\epsilon_{#1}}}
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\newcommand{\eps}[1][]{\ensuremath{\epsilon_{#1}}}
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% titre et auteur
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% titre et auteur
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\title{Rapport de stage dans l'UMR MIA Paris-Saclay}
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\title{Détection et comparaison de structures de réseaux écologiques}
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\author{Louis Lacoste}
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\author{Louis Lacoste}
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\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
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\begin{document}
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\begin{document}
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% Pour désactiver le fond (background)
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\DeactivateBG
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\include{page-garde}
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% Pour activer les onglets
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\ActivateBG
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\begin{selectlanguage}{french}
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\begin{selectlanguage}{french}
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\maketitle
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% \maketitle
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\tableofcontents
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\tableofcontents
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\pagenumbering{roman}
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\include{remerciements}
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\include{remerciements}
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\include{presentation_UMR}
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\include{chapter1-presentation_UMR}
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\end{selectlanguage}
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\end{selectlanguage}
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\begin{selectlanguage}{english}
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\begin{selectlanguage}{english}
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\pagenumbering{arabic}
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\include{chapter2-context}
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\include{chapter2-context}
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\include{chapter3-structure-detection}
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\include{chapter3-structure-detection}
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\include{chapter-4-simulation-studies}
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\include{chapter4-simulation-studies}
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% \chapter{Applications}
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% \chapter{Applications}
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% \include{Rcodes/real_data/application_dore}
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% \include{Rcodes/real_data/application_dore}
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% \include{Rcodes/real_data/CoOPLBM_completion_analyze}
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% \include{Rcodes/real_data/CoOPLBM_completion_analyze}
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\addtocounter{maincontentend}{1}
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\addtocounter{customchapter}{1}
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\printbibliography
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\printbibliography
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\end{selectlanguage}
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\end{selectlanguage}
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\begin{selectlanguage}{french}
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\begin{selectlanguage}{french}
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