rapport : template phd marche !

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Louis Lacoste 2024-07-04 17:49:43 +02:00
parent e608c75742
commit 5921c7fa60
10 changed files with 5147 additions and 1985 deletions

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\addtocounter{customchapter}{1}
\chapter{L'UMR MIA Paris-Saclay} \chapter{L'UMR MIA Paris-Saclay}
L'UMR MIA Paris-Saclay est une entité de recherche qui regroupe des L'UMR MIA Paris-Saclay est une entité de recherche qui regroupe des
@ -39,7 +40,7 @@ La figure \ref{fig:organigramme-umr} présente l'organigramme complet de l'unit
\begin{sidewaysfigure}[h!] \begin{sidewaysfigure}[h!]
\begin{center} \begin{center}
% \includegraphics[scale=0.4]{img/Organigramme_MIA-Paris-Saclay} % \includegraphics[scale=0.4]{img/Organigramme_MIA-Paris-Saclay}
\includegraphics[scale=0.3]{Organigramme_MIA-Paris-Saclay_GS 06-2024.jpg} \includegraphics[scale=0.45]{Organigramme_MIA-Paris-Saclay_GS 06-2024.jpg}
\caption{Organigramme de l'UMR} \caption{Organigramme de l'UMR}
\label{fig:organigramme-umr} \label{fig:organigramme-umr}
\end{center} \end{center}

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\addtocounter{customchapter}{1}
\chapter{Context of the study} \chapter{Context of the study}
\section{Usage and importance of bipartite graphs}\label{sec:usage-and-importance-of-bipartite-graphs} \section{Usage and importance of bipartite graphs}\label{sec:usage-and-importance-of-bipartite-graphs}

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\addtocounter{customchapter}{1}
\chapter[Structure detection in bipartite collection]{Structure detection in a collection of bipartite networks} \chapter[Structure detection in bipartite collection]{Structure detection in a collection of bipartite networks}
\section{Definition of a collection} \section{Definition of a collection}
\label{sec:definition-of-a-collection} \label{sec:definition-of-a-collection}

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\addtocounter{customchapter}{1}
\chapter{Simulation studies}\label{chap:simulation-studies} \chapter{Simulation studies}\label{chap:simulation-studies}
The below simulations are meant to test the capacities of our models. We assess The below simulations are meant to test the capacities of our models. We assess

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rapport/page-garde.tex Normal file
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\begin{titlepage}
%\thispagestyle{empty}
\newgeometry{left=7.5cm,bottom=2cm, top=1cm, right=1cm}
% \tikz[remember picture,overlay] \node[opacity=1,inner sep=0pt] at (-28mm,-135mm){\includegraphics{Bandeau_UPaS.pdf}};
% fonte sans empattement pour la page de titre
\fontfamily{fvs}\fontseries{m}\selectfont
%*****************************************************
%** LOGO ÉTABLISSEMENT PARTENAIRE SI COTUTELLE
%** CHANGER L'IMAGE PAR DÉFAUT **
%*****************************************************
\vspace{-10mm} % à ajuster en fonction de la hauteur du logo
\flushright\includesvg[scale=0.3]{logo/APT_Logo_RVB_Positif.svg}
\flushright\includegraphics[scale=0.3]{logo/X-IPparis-RVB.eps}
%*****************************************************
%******************** TITRE **************************
%*****************************************************
\flushright
\vspace{10mm} % à régler éventuellement
\color{pruneps}
\fontfamily{fvs}\fontseries{m}\fontsize{22}{26}\selectfont
\thetitle
%*****************************************************
%\fontfamily{fvs}\fontseries{m}\fontsize{8}{12}\selectfont
\normalsize
\vspace{1.5cm}
\color{black}
\textbf{Stage de M2 Mathématiques pour les Sciences du vivant}
\vspace{15mm}
\footnotesize Unité de recherche: Math\'ematiques et informatique appliqu\'ees \\(AgroParisTech), UMR 518 INRAE\\
\footnotesize Référent: Camille Coron\\
\vspace{15mm}
\textbf{par}\\
\bigskip
\Large {\color{pruneps} \textbf{\theauthor}}
%************************************
\vspace{\fill} % ALIGNER LE TABLEAU EN BAS DE PAGE
%************************************
\flushleft \small \textbf{Encadrement du stage :}
\bigskip
\scriptsize
\begin{tabular}{|p{8cm}l}\arrayrulecolor{pruneps}
\textbf{Pierre Barbillon} & Co-encadrant \\
\textbf{Sophie Donnet} & Co-encadrante
% \textbf{Prénom Nom} & Coencadrante\\
% Titre, Affiliation & \\
% \textbf{Prénom Nom} & Invité \\
% Titre, Affiliation & \\
\end{tabular}
\end{titlepage}

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\usepackage{url} % pour une gestion efficace des url \usepackage{url} % pour une gestion efficace des url
\usepackage[citecolor=blueind,urlcolor=blueps,bookmarks=false,hypertexnames=true]{hyperref} % pour les hyperliens dans le document \usepackage[citecolor=blueind,urlcolor=blueps,bookmarks=false,hypertexnames=true]{hyperref} % pour les hyperliens dans le document
\usepackage{tocbibind} % Pour avoir des index pour table des matières, biblio \usepackage{tocbibind} % Pour avoir des index pour table des matières, biblio
\usepackage{geometry}
\usepackage{tikz} % For graph plots \usepackage{tikz} % For graph plots
\usepackage[outline]{contour} \usepackage[outline]{contour}
\usepackage[super]{nth} \usepackage[super]{nth}
\usepackage{caption} % Figures \usepackage{caption} % Figures
\usepackage{subcaption} % And Subfigures \usepackage{subcaption} % And Subfigures
\usepackage{longtable} \usepackage{longtable}
\usepackage{colortbl}
\usepackage{titling}
\usepackage{rotating} % For allowing to rotate figures \usepackage{rotating} % For allowing to rotate figures
\usepackage{svg} % To allow svg inclusions \usepackage{svg} % To allow svg inclusions
\usepackage{float} % To allow Pandoc to control figure placement \usepackage{float} % To allow Pandoc to control figure placement
@ -86,40 +95,133 @@ automata,positioning}
% Bibliographie % Bibliographie
\input{../shared/biblio} \input{../shared/biblio}
\newcounter{customchapter}
\newcounter{maincontentend}
% Important : modifie ici le nombre de chapitres que tu as.
% A savoir que cela correspond aux nombres de labels du bandeau sur le côté.
% Le bandeau est automatiquement mis à jour pour correspondre à la valeur de la
% variable customchapter, avec 0 = pas de label.
\newcommand\ChapNum{5}
%%%%%% Debut code onglets
\usepackage{background}
\usepackage{changepage}
\usepackage{sectsty}
\newcommand\DeactivateBG{\backgroundsetup{contents={}}}
\newcommand\ActivateBG{\backgroundsetup{
scale=1,
angle=0,
opacity=0.5,
contents={
\ifnum\value{maincontentend}=0
\checkoddpage
\ifoddpage
\begin{tikzpicture}[remember picture,overlay]
\node[rotate=90,minimum width=\paperheight,minimum height=0.5cm,fill=gray!40,font=\large\bfseries,text=white,anchor=south west] at ($(current page.south east)$) {};
\node[rotate=90,minimum width=1/\ChapNum*\paperheight,minimum height=0.5cm,fill=\BoxColor,font=\large\bfseries,text=white,anchor=south west] at ([yshift=(\ChapNum-\thecustomchapter)/\ChapNum*\paperheight]$(current page.south east)$) {\chaptername~\thechapter};
\end{tikzpicture}
\else
\begin{tikzpicture}[remember picture,overlay]
\node[rotate=90,minimum width=\paperheight,minimum height=0.5cm,fill=gray!40,font=\large\bfseries,text=white,anchor=south west] at ([xshift=-\paperwidth+0.5cm]$(current page.south east)$) {};
\node[rotate=270,minimum width=1/\ChapNum*\paperheight,minimum height=0.5cm,fill=\BoxColor,font=\large\bfseries,text=white,anchor=south west] at ([yshift=(\ChapNum-\thecustomchapter+1)/\ChapNum*\paperheight,xshift=-\paperwidth]$(current page.south east)$) {\chaptername~\thechapter};
\end{tikzpicture}
\fi
\fi
}
}
}
\definecolor{bleuvert}{RGB}{102, 255, 204}
\definecolor{greenAgro}{HTML}{028887}
\newcommand\BoxColor{%
\ifcase\thecustomchapter greenAgro!40!black\or green!40!black\or blue!40!black\or orange!70!black\or violet!60!black\or teal!60!black\or red!40!black\or blue!40!black\else greenAgro!40!black
\fi}
% \newcommand\ChapterTitle{%
% \ifcase\thecustomchapter {\thechapter} \else {}
% \fi
% }
\sectionfont{\color{\BoxColor}}
\subsectionfont{\color{\BoxColor}}
\subsubsectionfont{\color{\BoxColor}}
%%%% End onglets
%%%%%%%%%%%%%% En-tête de chapitre %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\makeatletter
\def\thickhrulefill{\leavevmode \leaders \hrule height 1ex \hfill \kern \z@}
\def\@makechapterhead#1{%
\vspace*{-30\p@}%
{
\parindent \z@ \raggedleft \reset@font
\scshape
\color{\BoxColor}{\@chapapp{} {\fontsize{100pt}{12pt}\selectfont{\textbf{\thechapter}}}}
\par\nobreak
\interlinepenalty\@M
\Huge \bfseries {\color{\BoxColor}{#1}}\par\nobreak
\vspace*{-20\p@}%
{\color{\BoxColor}\hrulefill}
\par\nobreak
\vskip 10\p@
}}
\def\@makeschapterhead#1{%
\vspace*{-30\p@}%
{
\parindent \z@ \raggedleft \reset@font
\scshape \vphantom{\@chapapp{} \thechapter}
\par\nobreak
\interlinepenalty\@M
\Huge \bfseries {\color{\BoxColor}{#1}}\par\nobreak
\vspace*{-20\p@}%
\hrulefill
\par\nobreak
\vskip 10\p@
}}
\makeatother
% Nouvelles commandes % Nouvelles commandes
\newcommand{\Tau}{\mathcal{T}} \newcommand{\Tau}{\mathcal{T}}
\newcommand{\eps}[1][]{\ensuremath{\epsilon_{#1}}} \newcommand{\eps}[1][]{\ensuremath{\epsilon_{#1}}}
% titre et auteur % titre et auteur
\title{Rapport de stage dans l'UMR MIA Paris-Saclay} \title{Détection et comparaison de structures de réseaux écologiques}
\author{Louis Lacoste} \author{Louis Lacoste}
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\begin{document} \begin{document}
% Pour désactiver le fond (background)
\DeactivateBG
\include{page-garde}
% Pour activer les onglets
\ActivateBG
\begin{selectlanguage}{french} \begin{selectlanguage}{french}
\maketitle % \maketitle
\tableofcontents \tableofcontents
\pagenumbering{roman}
\include{remerciements} \include{remerciements}
\include{presentation_UMR} \include{chapter1-presentation_UMR}
\end{selectlanguage} \end{selectlanguage}
\begin{selectlanguage}{english} \begin{selectlanguage}{english}
\pagenumbering{arabic}
\include{chapter2-context} \include{chapter2-context}
\include{chapter3-structure-detection} \include{chapter3-structure-detection}
\include{chapter-4-simulation-studies} \include{chapter4-simulation-studies}
% \chapter{Applications} % \chapter{Applications}
% \include{Rcodes/real_data/application_dore} % \include{Rcodes/real_data/application_dore}
% \include{Rcodes/real_data/CoOPLBM_completion_analyze} % \include{Rcodes/real_data/CoOPLBM_completion_analyze}
\addtocounter{maincontentend}{1}
\addtocounter{customchapter}{1}
\printbibliography \printbibliography
\end{selectlanguage} \end{selectlanguage}
\begin{selectlanguage}{french} \begin{selectlanguage}{french}