rapport : na robustness interp
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6 changed files with 5605 additions and 5596 deletions
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@ -23,11 +23,11 @@ $\bm{\alpha}$,
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0.05 & 0.2 & 0.05 \\
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0.05 & 0.05 & 0.8
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\end{pmatrix}, &
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\bm{\alpha}^{nested} = \begin{pmatrix}
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0.9 & 0.25 & 0.1 \\
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0.3 & 0.15 & 0.05 \\
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0.1 & 0.05 & 0.05
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\end{pmatrix},
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~\bm{\alpha}^{nested} = \begin{pmatrix}
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0.9 & 0.65 & 0.1 \\
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0.35 & 0.15 & 0.05 \\
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0.1 & 0.05 & 0.05
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\end{pmatrix},
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\end{align*}
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where $\bm{\alpha}^{modular}$ represents networks where there are look-a-like
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@ -37,7 +37,7 @@ structure detected in ecology with generalist and specialist species and a
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\enquote{nested} structure.
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The collections contain two networks ($M=2$) of size $n^{m=1}_1 =
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n^{m=1}_2 = 40$ and
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n^{m=1}_2 = 20$ and
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$n^{m=2}_1 = n^{m=2}_2 = 120$. One collection is generated for each colBiSBM
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model. And the nodes block memberships (i.e., the row and column blocks they
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belong to) are saved.
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@ -85,22 +85,25 @@ corresponding \emph{model}. We will compare the results for one model box plot
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to the corresponding sep-model box plot, serving as a baseline.
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% TODO the ARI interpretation
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For the figure~\ref{fig:ari-dim-plot-na}, in almost all cases
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For the figure~\ref{fig:ari-dim-plot-na}, our models almost always do at least
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as good as the sep counterpart. The $iid$ model is the only one for which the
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sep performs better on the columns block memberships.
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The nested structure seems to complexify the block membership attribution with
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only ARI less than 0.75
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For the figure~\ref{fig:auc-plot}, overall we observe results similar to
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the ARIs, namely our models tend to have a slightly better AUC than their
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corresponding LBM.
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This indicates that link prediction benefits from the collection model
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in almost all cases.
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We may even be able to improve the results by using larger collections.
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For the figure~\ref{fig:auc-plot}, in almost all cases and for almost
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all models the differences are not significant but our models seems to perform
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marginally better and are only a few times under their LBM counterpart.
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This indicates that information is transferred from the bigger network when estimating the parameters and predicting link values.
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For the cases where our models do not perform better, we observe that
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$\pi\rho$-colBiSBM in
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the modular case seems to do slightly worse than its LBM counterpart for the
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first values of $p_{\texttt{NA}}$. The $\rho$-colBiSBM seem to suffer from the
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same problem, and encounters it too for some values with the nested structure.
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This may have to do with our simulation parameters giving for this models
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cases that are harder.
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Or this may be due to mis-attribution of the block memberships resulting in
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wrong predictions.
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On the differences between nested and modular structures, the latter shows
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a smaller variance in the AUC with our models predictions contained between
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0.7 and 0.9. Whereas for the nested structure, $iid$ and $\pi$ models are
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in quite similar value ranges with small variances but $\rho$ and
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$\pi\rho$ present smaller values and larger variances.
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An explanation for the cases in which our models return lower values than
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expected could be to look for in our simulation parameters. They may, combined
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with the $\rho$ model be a difficult case for the estimation.
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As we currently do not have identifiability results this is just and
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hypothesis.
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