\hypertarget{application-to-data}{% \section{\texorpdfstring{Application to \cite{doreRelativeEffectsAnthropogenic2021} data}{Application to data}}\label{application-to-data}} \label{sec:application-to-dorerelativeeffectsanthropogenic2021-data} \hypertarget{clustering-with-model-iid}{% \subsection{Clustering with model iid}\label{clustering-with-model-iid}} With the \emph{iid-colBiSBM} we obtain 5 collections with the following structures: \subsubsection{Pour la collection 1 } \includegraphics{./img/4c7e9819bb707372d35035947dfe7848b594b688.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule arroyo1982\_1+arroyo1982\_2+arroyo3\\ eberling1999\\ kato1990\\ petanidou1991\\ Junker2013\\ \addlinespace bartomeus2008\\ Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\ Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\ Struck1994\\ Kato2000\\ \addlinespace Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\ Baldock2011\_TB+Baldock2011\_JN\\ Dattilo2016\\ Devoto2005\_PP+Devoto2005\_AP\\ Devoto2005\_VT\\ \addlinespace Devoto2005\_LL+Devoto2005\_CT\\ Freitas2006\\ Gibson2006\_TA2\\ Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\ MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\ \addlinespace Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\ Pinheiro2008\\ Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\ Kato1993\\ KatoMiura1996\\ \addlinespace Kakutani1990\\ Inoue1990\\ Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\ Souza\_cerrado\\ Souza\_chaco\\ \addlinespace Souza\_pantanal\\ Souza\_vereda\\ Adedoja2019\\ Oleques2019\\ Baldock2019\_Bristol\\ \addlinespace Baldock2019\_Edinburgh\\ Baldock2019\_Leeds\\ Baldock2019\_Reading\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 2 } \includegraphics{./img/2e1295ef8143b9413e953a4c0c2da20d962158f6.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule dupont2003\\ herrera1988\\ inouye1988\\ medan2002ld\\ medan2002rb\\ \addlinespace ramirez1992\\ ramirez1989\\ Burkle2013\\ Olito-Fox2014\\ Benadi2013\_3(1340m)\\ \addlinespace Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\ Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\ Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\ Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\ Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\ \addlinespace Devoto2005\_LQ\\ Devoto2005\_LT+Devoto2005\_LH\\ LemusJimenez2003\\ Lundgren2005\\ Marrero2013\\ \addlinespace Trojelsgaard2015\_La Gomera\\ Trojelsgaard2015\_Gran Canaria\\ Zackenberg\\ Yoshihara2008\\ Fragoso\_RA1+Fragoso\_RD2\\ \addlinespace PopicThesis\\ Pornon2017\\ Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\ Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\ Blumel2016\\ \addlinespace Kantsa2018\\ Bennett2018\\ Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\ CordenizPicanco2018\_NatVeg\\ CordenizPicanco2018\_ExoFor\\ \addlinespace Benadi2018\\ Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\ Jolls2019\\ Traveset2013\_Fernandina\\ Traveset2013\_Pinta\\ \addlinespace Traveset2013\_Santiago\\ Traveset2013\_SantaCruz\\ Traveset2013\_SanCristobal\\ Simanonok2014\\ Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\] \subsubsection{Pour la collection 3 } \includegraphics{./img/e69b18419936d1e08301cce4cb1c78acba2044c4.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule small1976\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\] \subsubsection{Pour la collection 4 } \includegraphics{./img/c1e07feffa95efd0355d15ccfec6dff687c1ef88.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule smith-ramirez2005\\ Weiner2011\\ Kaiser\_control+Kaiser\_restored\\ Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\ Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\ \addlinespace Fang2012\\ Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\ Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\ Dupont2009\_IsenBjerg+Dupont2009\_Other\\ Gibson2006\_GA1\\ \addlinespace Gibson2006\_TA1\\ LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\ Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\ Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\ Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\ \addlinespace Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\ Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\ Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\ Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\ Neli2014\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 5 } \includegraphics{./img/be6eb1cef4cfa33f60e7f12e0d81b62fb4805328.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule olensen2002aig\\ olensen2002flo\\ vazquez2002\\ Shay2016\\ Gibson2006\_GA2\\ \addlinespace Gibson2006\_SG\\ Trojelsgaard2015\_El Hierro\\ Trojelsgaard2015\_Fuerteventura\\ Trojelsgaard2015\_Western Sahara\\ Robinson2018\\ \addlinespace CordenizPicanco2018\_NatFor\\ CordenizPicanco2018\_SemiPast\\ CordenizPicanco2018\_IntPast\\ Biella2019\\ Nel2017\\ \addlinespace Villalobos2019\\ LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\ Ferrero2013\\ Sritongchuay2019\_near+Sritongchuay2019\_far\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\] Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité). Pour la collection 1 : \[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\] Pour la collection 2 : \[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\] Pour la collection 3 : \[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\] Pour la collection 4 : \[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\] Pour la collection 5 : \[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\] \#\#\# Comparaison avec des infos supplémentaires \begin{figure} \centering \includegraphics{./img/85d1f067903ecf46ea5379990605207eea6dfa23.png} \caption{plot of chunk Annual\_timespan\_plot} \end{figure} \hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie}{% \subsubsection{Répartition dans les clusters selon la taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie}} \includegraphics{./img/0bd4d6aa00bf51bbf8e966b7664bea52ace7bede.png}\includegraphics{./img/ba57007c0b13d1fdaa06e6b689f6aaa356359870.png} \includegraphics{./img/482a3d80d6f3afab8ca8818d634d42ce2fc8e6d0.png}\includegraphics{./img/05f987b57c85b14df8f5e89bf0e380ecc9721edc.png} \hypertarget{tables}{% \paragraph{Tables}\label{tables}} \begin{verbatim} ## # A tibble: 9 × 25 ## Taxon Collection_1_Bloc_1 Collection_1_Bloc_2 Collection_1_Bloc_3 ## ## 1 Hymenoptera 24 0 17 ## 2 Diptera 9 0 8 ## 3 n.i. 8 0 11 ## 4 Lepidoptera 7 0 6 ## 5 Coleoptera 0 0 0 ## 6 Other 0 0 0 ## 7 Birds NA NA NA ## 8 Hemiptera NA NA NA ## 9 Squamata NA NA NA ## # ℹ 21 more variables: Collection_1_Bloc_4 , Collection_1_Bloc_5 , ## # Collection_1_Bloc_6 , Collection_1_Bloc_7 , ## # Collection_1_Bloc_8 , Collection_2_Bloc_1 , ## # Collection_2_Bloc_2 , Collection_2_Bloc_3 , ## # Collection_2_Bloc_4 , Collection_3_Bloc_1 , ## # Collection_3_Bloc_2 , Collection_4_Bloc_1 , ## # Collection_4_Bloc_2 , Collection_4_Bloc_3 , … \end{verbatim} \hypertarget{clustering-with-model-pi}{% \subsection{Clustering with model pi}\label{clustering-with-model-pi}} Avec le modèle \emph{pi} nous obtenons les 2 collections et les structures suivantes: \subsubsection{Pour la collection 1 } \includegraphics{./img/c8d33c523cb7b1b863840ffe9f838cc1a4dafff2.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule arroyo1982\_1+arroyo1982\_2+arroyo3\\ eberling1999\\ inouye1988\\ kato1990\\ ramirez1992\\ \addlinespace petanidou1991\\ ramirez1989\\ smith-ramirez2005\\ Junker2013\\ Kaiser\_control+Kaiser\_restored\\ \addlinespace bartomeus2008\\ Olito-Fox2014\\ Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\ Benadi2013\_3(1340m)\\ Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\ \addlinespace Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\ Fang2012\\ Shay2016\\ Struck1994\\ Kato2000\\ \addlinespace Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\ Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\ Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\ Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\ Baldock2011\_TB+Baldock2011\_JN\\ \addlinespace Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\ Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\ Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\ Dattilo2016\\ Devoto2005\_PP+Devoto2005\_AP\\ \addlinespace Devoto2005\_VT\\ Devoto2005\_LL+Devoto2005\_CT\\ Dupont2009\_IsenBjerg+Dupont2009\_Other\\ Freitas2006\\ Gibson2006\_TA1\\ \addlinespace Gibson2006\_TA2\\ Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\ LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\ LemusJimenez2003\\ Marrero2013\\ \addlinespace MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\ Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\ Pinheiro2008\\ Trojelsgaard2015\_La Gomera\\ Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\ \addlinespace Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\ Zackenberg\\ Yoshihara2008\\ Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\ Kato1993\\ \addlinespace KatoMiura1996\\ Kakutani1990\\ Inoue1990\\ Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\ PopicThesis\\ \addlinespace Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\ Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\ Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\ Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\ Blumel2016\\ \addlinespace Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\ Souza\_cerrado\\ Souza\_chaco\\ Souza\_pantanal\\ Souza\_vereda\\ \addlinespace Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\ Bennett2018\\ Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\ Adedoja2019\\ CordenizPicanco2018\_NatVeg\\ \addlinespace Benadi2018\\ Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\ Oleques2019\\ Jolls2019\\ Traveset2013\_Fernandina\\ \addlinespace Traveset2013\_Santiago\\ Traveset2013\_SantaCruz\\ Traveset2013\_SanCristobal\\ Simanonok2014\\ Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\ \addlinespace Baldock2019\_Bristol\\ Baldock2019\_Edinburgh\\ Baldock2019\_Leeds\\ Baldock2019\_Reading\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 2 } \includegraphics{./img/66882e0b770527a45b5ba01441cbb86ed71491bd.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule dupont2003\\ herrera1988\\ medan2002ld\\ medan2002rb\\ olensen2002aig\\ \addlinespace olensen2002flo\\ small1976\\ vazquez2002\\ Burkle2013\\ Weiner2011\\ \addlinespace Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\ Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\ Devoto2005\_LQ\\ Devoto2005\_LT+Devoto2005\_LH\\ Gibson2006\_GA1\\ \addlinespace Gibson2006\_GA2\\ Gibson2006\_SG\\ Lundgren2005\\ Trojelsgaard2015\_El Hierro\\ Trojelsgaard2015\_Gran Canaria\\ \addlinespace Trojelsgaard2015\_Fuerteventura\\ Trojelsgaard2015\_Western Sahara\\ Fragoso\_RA1+Fragoso\_RD2\\ Pornon2017\\ Kantsa2018\\ \addlinespace Robinson2018\\ CordenizPicanco2018\_NatFor\\ CordenizPicanco2018\_ExoFor\\ CordenizPicanco2018\_SemiPast\\ CordenizPicanco2018\_IntPast\\ \addlinespace Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\ Biella2019\\ Nel2017\\ Villalobos2019\\ LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\ \addlinespace Traveset2013\_Pinta\\ Ferrero2013\\ Neli2014\\ Sritongchuay2019\_near+Sritongchuay2019\_far\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\] Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité). Pour la collection 1 : \[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\] Pour la collection 2 : \[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\] \hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}{% \subsubsection{Répartition dans les clusters selon la taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}} \includegraphics{./img/ff78b3a602b38666524674a6e38d94ee26963376.png}\includegraphics{./img/57ebffb0873b5079093d6f7d474c00142ee5e2ab.png} \includegraphics{./img/1616c974be02698dd5c80725494a650ced9db214.png}\includegraphics{./img/b7dacdc5d5ad116b7b9b2c16dcd4084230bcf8cf.png} \hypertarget{clustering-with-model-rho}{% \subsection{Clustering with model rho}\label{clustering-with-model-rho}} Avec le modèle \emph{rho} nous obtenons les 1 collections et les structures suivantes: \subsubsection{Pour la collection 1 } \includegraphics{./img/ddafd83b5651fceb6261e4b7a7637e13859cac33.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule arroyo1982\_1+arroyo1982\_2+arroyo3\\ dupont2003\\ eberling1999\\ herrera1988\\ inouye1988\\ \addlinespace kato1990\\ medan2002ld\\ medan2002rb\\ olensen2002aig\\ olensen2002flo\\ \addlinespace ramirez1992\\ small1976\\ vazquez2002\\ petanidou1991\\ ramirez1989\\ \addlinespace smith-ramirez2005\\ Burkle2013\\ Junker2013\\ Weiner2011\\ Kaiser\_control+Kaiser\_restored\\ \addlinespace bartomeus2008\\ Olito-Fox2014\\ Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\ Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\ Benadi2013\_3(1340m)\\ \addlinespace Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\ Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\ Fang2012\\ Shay2016\\ Struck1994\\ \addlinespace Kato2000\\ Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\ Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\ Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\ Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\ \addlinespace Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\ Baldock2011\_TB+Baldock2011\_JN\\ Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\ Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\ Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\ \addlinespace Dattilo2016\\ Devoto2005\_LQ\\ Devoto2005\_PP+Devoto2005\_AP\\ Devoto2005\_LT+Devoto2005\_LH\\ Devoto2005\_VT\\ \addlinespace Devoto2005\_LL+Devoto2005\_CT\\ Dupont2009\_IsenBjerg+Dupont2009\_Other\\ Freitas2006\\ Gibson2006\_GA1\\ Gibson2006\_GA2\\ \addlinespace Gibson2006\_SG\\ Gibson2006\_TA1\\ Gibson2006\_TA2\\ Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\ LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\ \addlinespace LemusJimenez2003\\ Lundgren2005\\ Marrero2013\\ MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\ Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\ \addlinespace Pinheiro2008\\ Trojelsgaard2015\_El Hierro\\ Trojelsgaard2015\_La Gomera\\ Trojelsgaard2015\_Gran Canaria\\ Trojelsgaard2015\_Fuerteventura\\ \addlinespace Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\ Trojelsgaard2015\_Western Sahara\\ Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\ Zackenberg\\ Yoshihara2008\\ \addlinespace Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\ Kato1993\\ KatoMiura1996\\ Kakutani1990\\ Inoue1990\\ \addlinespace Fragoso\_RA1+Fragoso\_RD2\\ Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\ PopicThesis\\ Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\ Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\ \addlinespace Pornon2017\\ Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\ Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\ Blumel2016\\ Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\ \addlinespace Kantsa2018\\ Souza\_cerrado\\ Souza\_chaco\\ Souza\_pantanal\\ Souza\_vereda\\ \addlinespace Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\ Robinson2018\\ Bennett2018\\ Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\ Adedoja2019\\ \addlinespace CordenizPicanco2018\_NatFor\\ CordenizPicanco2018\_NatVeg\\ CordenizPicanco2018\_ExoFor\\ CordenizPicanco2018\_SemiPast\\ CordenizPicanco2018\_IntPast\\ \addlinespace Benadi2018\\ Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\ Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\ Oleques2019\\ Biella2019\\ \addlinespace Jolls2019\\ Nel2017\\ Villalobos2019\\ LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\ Traveset2013\_Fernandina\\ \addlinespace Traveset2013\_Pinta\\ Traveset2013\_Santiago\\ Traveset2013\_SantaCruz\\ Traveset2013\_SanCristobal\\ Ferrero2013\\ \addlinespace Simanonok2014\\ Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\ Neli2014\\ Sritongchuay2019\_near+Sritongchuay2019\_far\\ Baldock2019\_Bristol\\ \addlinespace Baldock2019\_Edinburgh\\ Baldock2019\_Leeds\\ Baldock2019\_Reading\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\] Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité). Pour la collection 1 : \[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\] \hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}{% \subsubsection{Répartition dans les clusters selon la taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}} \includegraphics{./img/35ffbce157e0b3bb2a32af4dbc7faa201c946a6b.png}\includegraphics{./img/62d45913b19d56f0ab48a367e53b8ed8fa83c2cc.png} \includegraphics{./img/d1f52d1df28195df25bdfd2bf18f50a176d52c90.png}\includegraphics{./img/ce6571ff09f37636eff0631a2269c77055df1403.png} \hypertarget{clustering-with-model-pirho}{% \subsection{Clustering with model pirho}\label{clustering-with-model-pirho}} Avec le modèle \emph{pirho} nous obtenons les 15 collections et les structures suivantes: \subsubsection{Pour la collection 1 } \includegraphics{./img/1b76f16cf61f19fcd2cd382227f1c1dafbdd86b8.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule arroyo1982\_1+arroyo1982\_2+arroyo3\\ dupont2003\\ petanidou1991\\ Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\ Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\ \addlinespace Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\ Pinheiro2008\\ Souza\_pantanal\\ Robinson2018\\ Jolls2019\\ \addlinespace Traveset2013\_Fernandina\\ Baldock2019\_Leeds\\ Baldock2019\_Reading\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\] \subsubsection{Pour la collection 2 } \includegraphics{./img/9a6b30dad9046620bd49013adaef8960862792a2.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Benadi2013\_3(1340m)\\ Trojelsgaard2015\_La Gomera\\ CordenizPicanco2018\_SemiPast\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\] \subsubsection{Pour la collection 3 } \includegraphics{./img/b8abb8188b0bc33c6f0544fed1eb1ff74aac349a.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Kato2000\\ Freitas2006\\ Inoue1990\\ Souza\_cerrado\\ Adedoja2019\\ \addlinespace Baldock2019\_Bristol\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 4 } \includegraphics{./img/73d8481e68a1a4993a0eda2edcc5b2a65ac241c2.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\ LemusJimenez2003\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\] \subsubsection{Pour la collection 5 } \includegraphics{./img/f5433f933dadae33c549c51d26316f90eb2bbdcd.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule inouye1988\\ Junker2013\\ Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\ Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\ Kakutani1990\\ \addlinespace Fragoso\_RA1+Fragoso\_RD2\\ Souza\_chaco\\ Oleques2019\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 6 } \includegraphics{./img/9b8b977552f9856c8f2569fd0a1796c7df59125e.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule medan2002ld\\ small1976\\ smith-ramirez2005\\ Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\ Shay2016\\ \addlinespace Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\ Lundgren2005\\ Zackenberg\\ Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\ Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\ \addlinespace Bennett2018\\ CordenizPicanco2018\_NatFor\\ CordenizPicanco2018\_ExoFor\\ CordenizPicanco2018\_IntPast\\ Benadi2018\\ \addlinespace Villalobos2019\\ Traveset2013\_Santiago\\ Traveset2013\_SantaCruz\\ Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\ Sritongchuay2019\_near+Sritongchuay2019\_far\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 7 } \includegraphics{./img/2bc2aa5f9522a80d234598c960d2b148c78a0bf0.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule medan2002rb\\ olensen2002flo\\ vazquez2002\\ Trojelsgaard2015\_Gran Canaria\\ Trojelsgaard2015\_Western Sahara\\ \addlinespace LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\] \subsubsection{Pour la collection 8 } \includegraphics{./img/2435c20b207156887cade4b89b0572d42c93ab82.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Weiner2011\\ Kaiser\_control+Kaiser\_restored\\ Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\ Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\ Fang2012\\ \addlinespace Gibson2006\_SG\\ Gibson2006\_TA1\\ Trojelsgaard2015\_Fuerteventura\\ Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\ Biella2019\\ \addlinespace Nel2017\\ Ferrero2013\\ Neli2014\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 9 } \includegraphics{./img/01cf8becd8b4fa7e13437d68ce7a48e6365fc5d8.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule eberling1999\\ ramirez1992\\ Struck1994\\ Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\ Devoto2005\_PP+Devoto2005\_AP\\ \addlinespace Devoto2005\_VT\\ Gibson2006\_TA2\\ MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\ Yoshihara2008\\ PopicThesis\\ \addlinespace Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\ Souza\_vereda\\ Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\ Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\] \subsubsection{Pour la collection 10 } \includegraphics{./img/f191d6381b05b4f2f4139e717eebf1075211d7ea.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule herrera1988\\ Burkle2013\\ bartomeus2008\\ Olito-Fox2014\\ Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\ \addlinespace Baldock2011\_TB+Baldock2011\_JN\\ Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\ Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\ Devoto2005\_LQ\\ Devoto2005\_LT+Devoto2005\_LH\\ \addlinespace Devoto2005\_LL+Devoto2005\_CT\\ Dupont2009\_IsenBjerg+Dupont2009\_Other\\ Gibson2006\_GA1\\ LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\ Marrero2013\\ \addlinespace Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\ Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\ Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\ Pornon2017\\ Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\ \addlinespace Blumel2016\\ Kantsa2018\\ Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\ CordenizPicanco2018\_NatVeg\\ Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\ \addlinespace Traveset2013\_Pinta\\ Traveset2013\_SanCristobal\\ Simanonok2014\\ Baldock2019\_Edinburgh\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\] \subsubsection{Pour la collection 11 } \includegraphics{./img/b890876aef1a920f5fdc0fb91d549ad59455c587.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule kato1990\\ ramirez1989\\ Kato1993\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\] \subsubsection{Pour la collection 12 } \includegraphics{./img/63fe35c05911cc6ad732c2424d821e1ff6017bcf.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\ Dattilo2016\\ KatoMiura1996\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\] \subsubsection{Pour la collection 13 } \includegraphics{./img/3c15b096f5435091aae32ed4477d5df277c2af82.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule olensen2002aig\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\] \subsubsection{Pour la collection 14 } \includegraphics{./img/888bd40e8c6409a43aae4aa9744e362b2ea7da34.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Trojelsgaard2015\_El Hierro\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\] \subsubsection{Pour la collection 15 } \includegraphics{./img/be03e1e125628e702f825f4e55f2a3d50d226045.png}\newline \tiny \begin{tabular}{l} \toprule Networks\\ \midrule Gibson2006\_GA2\\ \bottomrule \end{tabular} \normalsize\newline\[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\] Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de connectivité). Pour la collection 1 : \[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\] Pour la collection 2 : \[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\] Pour la collection 3 : \[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\] Pour la collection 4 : \[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\] Pour la collection 5 : \[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\] Pour la collection 6 : \[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\] Pour la collection 7 : \[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\] Pour la collection 8 : \[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\] Pour la collection 9 : \[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\] Pour la collection 10 : \[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\] Pour la collection 11 : \[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\] Pour la collection 12 : \[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\] Pour la collection 13 : \[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\] Pour la collection 14 : \[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\] Pour la collection 15 : \[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\] \hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}{% \subsubsection{Répartition dans les clusters selon la taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}} \includegraphics{./img/337973465a11f78731e92a7e62b1f4c2164ab43e.png}\includegraphics{./img/09bed9592345eff7f0e23841c310114fc4b5773d.png} \includegraphics{./img/9e913a77139e5e0a619c6c0e9beef79f87c6bb61.png}\includegraphics{./img/c3c10578cbfaf01a313454190bda1efad0227b03.png}