From 0fabbed30a2e684f5ce10209287df691b0f9a532 Mon Sep 17 00:00:00 2001
From: Louis Lacoste <louis.lacoste@hotmail.fr>
Date: Fri, 24 May 2024 16:03:38 +0200
Subject: [PATCH] Adding script launcher migale

---
 code/scripts/migale_application_weboflife.sh | 31 ++++++++++++++++++++
 1 file changed, 31 insertions(+)
 create mode 100755 code/scripts/migale_application_weboflife.sh

diff --git a/code/scripts/migale_application_weboflife.sh b/code/scripts/migale_application_weboflife.sh
new file mode 100755
index 0000000..d7eac3c
--- /dev/null
+++ b/code/scripts/migale_application_weboflife.sh
@@ -0,0 +1,31 @@
+#!/usr/bin/env bash
+#$ -V
+#$ -cwd
+#$ -N weboflife_app
+#$ -m besa
+#$ -t 1:4
+#$ -q long.q
+#$ -pe thread 64
+#$ -M louis.lacoste+migale@agroparistech.fr
+#$ -o logs/$JOB_NAME.$TASK_ID
+#$ -e logs/$JOB_NAME.$TASK_ID
+
+# Creating log directory if it doesn't exists
+BASE_DIR="/home/$USER/work/mia-stage-2024"
+LOG_DIR=$(echo "$BASE_DIR/logs")
+
+if [ ! -d "$LOG_DIR" ]; then
+    mkdir -p $LOG_DIR
+fi
+
+# Constant data
+MODELARRAY=("iid" "pi" "rho" "pirho")
+
+MODEL=${MODELARRAY[$(($((SGE_TASK_ID - 1)) % 4))]}
+
+# Finding directory
+APPLICATIONS_DIR=$(echo "$BASE_DIR/code/applications")
+
+echo $APPLICATIONS_DIR
+
+Rscript "${APPLICATIONS_DIR}/weboflife/01_weboflife_clusterize.R" --model $MODEL