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Investigating RAM usage

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This commit is contained in:
Louis Lacoste 2024-04-24 14:43:05 +02:00
parent 903aeef4c6
commit 14940a1041
7 changed files with 16596 additions and 0 deletions
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library(profvis)
library(here)
special <- "preschedule_10net"
backend <- "parallel"
data_folder <- file.path(here(), "code", "results", "investigating", "ram_usage")
if (!(dir.exists(data_folder))) {
dir.create(data_folder)
}
filename <- paste0(
"prof_vignette_", backend, "_", special, "_",
format(Sys.time(), "%d-%M-%Y_%H-%m-%S"), ".Rdata"
)
data_file <- file.path(data_folder, filename)
gcinfo(verbose = TRUE)
profvis({
## ----setup---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
library(colSBM)
library(patchwork)
library(parallel)
data("dorebipartite")
## ----warning=FALSE-------------------------------------------------------------------------------------------------------------------------------------------------------------------
set.seed(1234, "L'Ecuyer-CMRG")
## ----results=FALSE, warning=FALSE----------------------------------------------------------------------------------------------------------------------------------------------------
net_clust <- clusterize_bipartite_networks(
netlist = c(dorebipartite[1L:10L]), # A list of networks
colsbm_model = "iid", # The name of the model
nb_run = 1L, # Number of runs of the algorithm
global_opts = list(
verbosity = 0L,
plot_details = 0L,
nb_cores = 2L,
backend = backend,
Q1_max = 9L,
Q2_max = 9L
) # Max number of clusters
)
},
prof_output = data_file
)

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memory profiling: GC profiling: line profiling: sample.interval=10000
:1945462:3681953:130729536:5634:"sum" "profvis"
#File 1: /home/polarolouis/Documents/Temporary Projects/colSBM/R/utils.R
#File 2: /home/polarolouis/Documents/Temporary Projects/colSBM/R/R6class-fitBipartiteSBMPop.R
#File 3: /home/polarolouis/Documents/Temporary Projects/colSBM/R/R6class-bisbmpop.R
#File 4: /home/polarolouis/Documents/Temporary Projects/colSBM/R/user-function.R
#File 5: <expr>
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