Déplacement dans le dossier code

2024-04-15 16:06:39 +02:00 · 2024-04-15 16:06:39 +02:00 · 88ac2e8566
commit 88ac2e8566
parent 1306e2ea0e
338 changed files with 0 additions and 0 deletions
--- a/code/data/brazilian-networks/AtlanticForestInvertFloAuthorsInfo_2022-07.csv
+++ b/code/data/brazilian-networks/AtlanticForestInvertFloAuthorsInfo_2022-07.csv
--- a/code/data/brazilian-networks/AtlanticForestInvertFloInteractionData_2022-07.csv
+++ b/code/data/brazilian-networks/AtlanticForestInvertFloInteractionData_2022-07.csv
--- a/code/data/brazilian-networks/Metadata_S1.pdf
+++ b/code/data/brazilian-networks/Metadata_S1.pdf
--- a/code/old/real_data/CoOPLBM_completion_analyze.Rmd
+++ b/code/old/real_data/CoOPLBM_completion_analyze.Rmd
--- a/code/old/real_data/CoOPLBM_completion_analyze.tex
+++ b/code/old/real_data/CoOPLBM_completion_analyze.tex
--- a/code/old/real_data/application_dore.Rmd
+++ b/code/old/real_data/application_dore.Rmd
--- a/code/old/real_data/application_dore.tex
+++ b/code/old/real_data/application_dore.tex
--- a/code/old/real_data/data/Data.rds
+++ b/code/old/real_data/data/Data.rds
--- a/code/old/real_data/data/DataTotherbi_updateJune2023.csv
+++ b/code/old/real_data/data/DataTotherbi_updateJune2023.csv
--- a/code/old/real_data/data/completed0.2.rds
+++ b/code/old/real_data/data/completed0.2.rds
--- a/code/old/real_data/data/completed0.5.rds
+++ b/code/old/real_data/data/completed0.5.rds
--- a/code/old/real_data/data/completedrandom.rds
+++ b/code/old/real_data/data/completedrandom.rds
--- a/code/old/real_data/data/dore-matrices.Rds
+++ b/code/old/real_data/data/dore-matrices.Rds
--- a/code/old/real_data/data/dore_collection_clustering1-05-05-23-15:41:58.Rds
+++ b/code/old/real_data/data/dore_collection_clustering1-05-05-23-15:41:58.Rds
--- a/code/old/real_data/data/dore_collection_clustering1-05-05-23-15:43:50.Rds
+++ b/code/old/real_data/data/dore_collection_clustering1-05-05-23-15:43:50.Rds
--- a/code/old/real_data/data/dore_collection_clustering2-05-05-23-16:21:22.Rds
+++ b/code/old/real_data/data/dore_collection_clustering2-05-05-23-16:21:22.Rds
--- a/code/old/real_data/data/dore_collection_clustering2-05-05-23-16:24:20.Rds
+++ b/code/old/real_data/data/dore_collection_clustering2-05-05-23-16:24:20.Rds
--- a/code/old/real_data/data/dore_collection_clustering3-05-05-23-15:59:04.Rds
+++ b/code/old/real_data/data/dore_collection_clustering3-05-05-23-15:59:04.Rds
--- a/code/old/real_data/data/dore_collection_clustering3-05-05-23-16:07:45.Rds
+++ b/code/old/real_data/data/dore_collection_clustering3-05-05-23-16:07:45.Rds
--- a/code/old/real_data/data/dore_collection_clustering_nb_run1_iid_123networks_23-05-23-10:21:50.Rds
+++ b/code/old/real_data/data/dore_collection_clustering_nb_run1_iid_123networks_23-05-23-10:21:50.Rds
--- a/code/old/real_data/data/dore_collection_clustering_nb_run1_iid_123networks_24-05-23-21:40:42.Rds
+++ b/code/old/real_data/data/dore_collection_clustering_nb_run1_iid_123networks_24-05-23-21:40:42.Rds
--- a/code/old/real_data/data/dore_collection_clustering_nb_run1_pi_123networks_25-05-23-17:31:25.Rds
+++ b/code/old/real_data/data/dore_collection_clustering_nb_run1_pi_123networks_25-05-23-17:31:25.Rds
--- a/code/old/real_data/data/dore_collection_clustering_nb_run1_pirho_123networks_26-05-23-19:22:55.Rds
+++ b/code/old/real_data/data/dore_collection_clustering_nb_run1_pirho_123networks_26-05-23-19:22:55.Rds
--- a/code/old/real_data/data/dore_collection_clustering_nb_run1_rho_123networks_25-05-23-13:58:30.Rds
+++ b/code/old/real_data/data/dore_collection_clustering_nb_run1_rho_123networks_25-05-23-13:58:30.Rds
--- a/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-18:40:10.Rds
+++ b/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-18:40:10.Rds
--- a/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-19:22:19.Rds
+++ b/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-19:22:19.Rds
--- a/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-21:09:12.Rds
+++ b/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-21:09:12.Rds
--- a/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_rho_70_networks_07-06-23-20:03:53.Rds
+++ b/code/old/real_data/data/dore_point_2_completed_collection_clustering_nb_run_1_rho_70_networks_07-06-23-20:03:53.Rds
--- a/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-19:19:53.Rds
+++ b/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-19:19:53.Rds
--- a/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-21:31:20.Rds
+++ b/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-21:31:20.Rds
--- a/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-21:13:10.Rds
+++ b/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-21:13:10.Rds
--- a/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_rho_70_networks_07-06-23-21:03:50.Rds
+++ b/code/old/real_data/data/dore_point_5_completed_collection_clustering_nb_run_1_rho_70_networks_07-06-23-21:03:50.Rds
--- a/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-21:44:14.Rds
+++ b/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_iid_70_networks_07-06-23-21:44:14.Rds
--- a/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-22:52:47.Rds
+++ b/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_pi_70_networks_07-06-23-22:52:47.Rds
--- a/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-23:07:08.Rds
+++ b/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_pirho_70_networks_07-06-23-23:07:08.Rds
--- a/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_rho_70_networks_08-06-23-18:16:04.Rds
+++ b/code/old/real_data/data/dore_random_completed_collection_clustering_nb_run_1_rho_70_networks_08-06-23-18:16:04.Rds
--- a/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_iid_70_networks_08-06-23-16:31:17.Rds
+++ b/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_iid_70_networks_08-06-23-16:31:17.Rds
--- a/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_pi_70_networks_08-06-23-16:52:16.Rds
+++ b/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_pi_70_networks_08-06-23-16:52:16.Rds
--- a/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_pirho_70_networks_08-06-23-16:41:33.Rds
+++ b/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_pirho_70_networks_08-06-23-16:41:33.Rds
--- a/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_rho_70_networks_08-06-23-16:49:58.Rds
+++ b/code/old/real_data/data/dore_uncompleted_collection_clustering_nb_run_1_rho_70_networks_08-06-23-16:49:58.Rds
--- a/code/old/real_data/data/interaction-data.txt
+++ b/code/old/real_data/data/interaction-data.txt
--- a/code/old/real_data/data/metadataherbi_15_10_2022_clean_update22_02_2023.csv
+++ b/code/old/real_data/data/metadataherbi_15_10_2022_clean_update22_02_2023.csv
--- a/code/old/real_data/data/supinfo.xlsx
+++ b/code/old/real_data/data/supinfo.xlsx
--- a/code/old/real_data/netclustering_CoOPLBM_completed.R
+++ b/code/old/real_data/netclustering_CoOPLBM_completed.R
--- a/code/old/real_data/netclustering_check_real_data.R
+++ b/code/old/real_data/netclustering_check_real_data.R
--- a/code/old/real_data/netclustering_dore_analyze.R
+++ b/code/old/real_data/netclustering_dore_analyze.R
--- a/code/old/real_data/presentation_dore.Rmd
+++ b/code/old/real_data/presentation_dore.Rmd
--- a/code/old/real_data/presentation_dore.tex
+++ b/code/old/real_data/presentation_dore.tex
--- a/code/old/real_data/references.bib
+++ b/code/old/real_data/references.bib
--- a/code/old/real_data/temporary_plot.R
+++ b/code/old/real_data/temporary_plot.R
--- a/code/old/simulation/NA_robustness_analyse.Rmd
+++ b/code/old/simulation/NA_robustness_analyse.Rmd
--- a/code/old/simulation/NA_robustness_analyse.tex
+++ b/code/old/simulation/NA_robustness_analyse.tex
--- a/code/old/simulation/NA_robustness_check.R
+++ b/code/old/simulation/NA_robustness_check.R
--- a/code/old/simulation/analyze_results.R
+++ b/code/old/simulation/analyze_results.R
--- a/code/old/simulation/compare_parallelization_levels.R
+++ b/code/old/simulation/compare_parallelization_levels.R
--- a/code/old/simulation/data/NA_robustness_results-12-06-23_21-03.Rds
+++ b/code/old/simulation/data/NA_robustness_results-12-06-23_21-03.Rds
--- a/code/old/simulation/data/NA_robustness_results-13-06-23_16-07.Rds
+++ b/code/old/simulation/data/NA_robustness_results-13-06-23_16-07.Rds
--- a/code/old/simulation/data/NA_robustness_results-14-06-23_15-03.Rds
+++ b/code/old/simulation/data/NA_robustness_results-14-06-23_15-03.Rds
--- a/code/old/simulation/data/NA_robustness_results-alpha_0.7,
+++ b/code/old/simulation/data/NA_robustness_results-alpha_0.7,
--- a/code/old/simulation/data/divergence_modular_to_nested_28-03-23_21:47:43.Rds
+++ b/code/old/simulation/data/divergence_modular_to_nested_28-03-23_21:47:43.Rds
--- a/code/old/simulation/data/divergence_modular_to_nested_29-03-23_10:01:08.Rds
+++ b/code/old/simulation/data/divergence_modular_to_nested_29-03-23_10:01:08.Rds
--- a/code/old/simulation/data/divergence_modular_to_nested_with_3_repetitions_29-03-23_13:55:42.Rds
+++ b/code/old/simulation/data/divergence_modular_to_nested_with_3_repetitions_29-03-23_13:55:42.Rds
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
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--- a/code/old/simulation/data/inference_testing_2023-07-03
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--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
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--- a/code/old/simulation/data/inference_testing_2023-07-03
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--- a/code/old/simulation/data/inference_testing_2023-07-03
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--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/inference_testing_2023-07-03
+++ b/code/old/simulation/data/inference_testing_2023-07-03
--- a/code/old/simulation/data/model_selection_check_2023-05-11
+++ b/code/old/simulation/data/model_selection_check_2023-05-11
--- a/code/old/simulation/data/model_selection_check_2023-05-11_0001,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_0001,
--- a/code/old/simulation/data/model_selection_check_2023-05-11_0501,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_0501,
--- a/code/old/simulation/data/model_selection_check_2023-05-11_1001,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_1001,
--- a/code/old/simulation/data/model_selection_check_2023-05-11_1501,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_1501,
--- a/code/old/simulation/data/model_selection_check_2023-05-11_2001,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_2001,
--- a/code/old/simulation/data/model_selection_check_2023-05-11_2501,
+++ b/code/old/simulation/data/model_selection_check_2023-05-11_2501,
--- a/code/old/simulation/data/model_selection_check_3_rep_0001,
+++ b/code/old/simulation/data/model_selection_check_3_rep_0001,
--- a/code/old/simulation/data/model_selection_check_3_rep_0701,
+++ b/code/old/simulation/data/model_selection_check_3_rep_0701,
--- a/code/old/simulation/data/model_selection_check_3_rep_1401,
+++ b/code/old/simulation/data/model_selection_check_3_rep_1401,
--- a/code/old/simulation/data/model_selection_check_3_rep_2101,
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--- a/code/old/simulation/data/model_selection_check_3_rep_2801,
+++ b/code/old/simulation/data/model_selection_check_3_rep_2801,
--- a/code/old/simulation/data/model_selection_check_3_rep_3501,
+++ b/code/old/simulation/data/model_selection_check_3_rep_3501,
--- a/code/old/simulation/data/model_selection_check_3_rep_4201,
+++ b/code/old/simulation/data/model_selection_check_3_rep_4201,
--- a/code/old/simulation/data/model_selection_check_3_rep_4901,
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--- a/code/old/simulation/data/model_selection_check_3_rep_5601,
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--- a/code/old/simulation/data/model_selection_check_3_rep_6301,
+++ b/code/old/simulation/data/model_selection_check_3_rep_6301,
--- a/code/old/simulation/data/model_selection_check_3_rep_7001,
+++ b/code/old/simulation/data/model_selection_check_3_rep_7001,
--- a/Show more
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