polarolouis/mia-stage-2024
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Fixing order

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This commit is contained in:
Louis Lacoste 2024-04-19 17:06:33 +02:00
parent e71c2f9433
commit c2f1bd0cce
1 changed files with 11 additions and 3 deletions
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14
code/scripts/migale_simulations_NA_robustness.sh
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@ -7,8 +7,8 @@
#$ -q short.q
#$ -pe thread 64
#$ -M louis.lacoste+migale@agroparistech.fr
#$ -o logs/$JOB_NAME.$TASK_ID.out
#$ -e logs/$JOB_NAME.$TASK_ID.err
#$ -o logs/$JOB_NAME.$TASK_ID
#$ -e logs/$JOB_NAME.$TASK_ID
# Creating log directory if it doesn't exists
@ -16,7 +16,15 @@
STRUCTA=("nested" "modular")
SAMPLINGA=("uniform" "row" "col" "rowcol")
STRUCT=${STRUCTA[$(($(($((SGE_TASK_ID - 1)) + $((SGE_TASK_ID - 1)) / 4)) % 2))]}
SAMPLING=${SAMPLINGA[$(($((SGE_TASK_ID - 1)) % 4))]}
BASE_DIR="/home/llacoste/work/mia-stage-2024/"
LOG_DIR=$(echo "$BASE_DIR/logs")
if [ ! -d "$LOG_DIR" ]; then
mkdir -p $LOG_DIR
fi
# Finding simulations directory
SIMULATIONS_DIR=$(echo "$BASE_DIR/code/simulations")
@ -25,4 +33,4 @@ echo $SIMULATIONS_DIR
# Parsing sge array id
Rscript "${SIMULATIONS_DIR}/simulations_NA_robustness.R" --struct ${STRUCTA[$(($((SGE_TASK_ID - 1)) % 2))]} --sampling ${SAMPLINGA[$(($((SGE_TASK_ID - 1)) % 4))]}
Rscript "${SIMULATIONS_DIR}/simulations_NA_robustness.R" --struct $STRUCT --sampling $SAMPLING