Adding more bombus and rebuild net structure

principal.tex

@@ -51,10 +51,12 @@
 \begin{frame}{Analysis methods for a network}
     TODO (Supprimable) Several methods~:
     \begin{itemize}
-        \item Metrics at node level: degree, centrality\dots
+        \item Metrics at \begin{itemize}
-        \item Metrics at a network level: density, nestedness\dots
+                  \item node level: degree, centrality\dots
-        \item \textbf<2>{Node embedding and/or clustering with latent variable models
+                  \item network level: density, nestedness\dots
-                  \\\cite{hoffLatentSpaceApproaches2002,snijdersEstimationPredictionStochastic1997}}
+              \end{itemize}
+        \item \textbf<2>{Node embedding and/or clustering with latent variable models}
+              \\\cite{hoffLatentSpaceApproaches2002,snijdersEstimationPredictionStochastic1997}
         \item Node or network embedding with Graph Convolutional Networks
               \\\cite{kipfVariationalGraphAutoEncoders2016a}
     \end{itemize}
@@ -114,18 +116,27 @@
     \frametitle{Multiple networks}
     \begin{figure}[ht]
         \centering
-        \begin{subfigure}[ht]{0.3\textwidth}
+        \begin{subfigure}[ht]{0.475\textwidth}
-            \includegraphics[width=1\textwidth]{tikz/applications/baldock/mat-Baldock2019_Bristol.pdf}
+            \centering
+            \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/mat-Baldock2019_Bristol.pdf}
             \caption{Bristol}
         \end{subfigure}
-        \begin{subfigure}[ht]{0.3\textwidth}
+        \begin{subfigure}[ht]{0.475\textwidth}
-            \includegraphics[width=1\textwidth]{tikz/applications/baldock/mat-Baldock2019_Edinburgh.pdf}
+            \centering
+            \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/mat-Baldock2019_Edinburgh.pdf}
             \caption{Edinburgh}
         \end{subfigure}
-        \begin{subfigure}[ht]{0.3\textwidth}
+        \hfill
-            \includegraphics[width=1\textwidth]{tikz/applications/baldock/mat-Baldock2019_Leeds.pdf}
+        \begin{subfigure}[ht]{0.475\textwidth}
+            \centering
+            \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/mat-Baldock2019_Leeds.pdf}
             \caption{Leeds}
         \end{subfigure}
+        \begin{subfigure}[ht]{0.475\textwidth}
+            \centering
+            \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/mat-Baldock2019_Reading.pdf}
+            \caption{Reading}
+        \end{subfigure}
         \caption{Adjacency matrices,~\cite{baldockSystemsApproachReveals2019}}
         \label{fig:adj}
     \end{figure}
@@ -141,19 +152,28 @@
     \onslide<2>{
         \begin{figure}[ht]
             \centering
-            \begin{subfigure}[ht]{0.3\textwidth}
+            \begin{subfigure}[ht]{0.35\textwidth}
-                \includegraphics[width=1\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Bristol.pdf}
+                \centering
+                \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Bristol.pdf}
                 \caption{Bristol}
             \end{subfigure}
-            \begin{subfigure}[ht]{0.3\textwidth}
+            \begin{subfigure}[ht]{0.35\textwidth}
-                \includegraphics[width=1\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Edinburgh.pdf}
+                \centering
+                \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Edinburgh.pdf}
                 \caption{Edinburgh}
             \end{subfigure}
-            \begin{subfigure}[ht]{0.3\textwidth}
+            \hfill
-                \includegraphics[width=1\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Leeds.pdf}
+            \begin{subfigure}[ht]{0.35\textwidth}
+                \centering
+                \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Leeds.pdf}
                 \caption{Leeds}
             \end{subfigure}
-            \caption{Reordered adjacency matrices, thanks to LBM}
+            \begin{subfigure}[ht]{0.35\textwidth}
+                \centering
+                \includegraphics[width=0.5\textwidth]{tikz/applications/baldock/bisbm-mat-Baldock2019_Reading.pdf}
+                \caption{Reading}
+            \end{subfigure}
+            \caption{Reordered adjacency matrices, using LBM}
             \label{fig:adj-reord}
         \end{figure}
     }
@@ -290,20 +310,52 @@
     \end{figure}
 \end{frame}
 
-\begin{frame}
+\begin{frame}{\emph{Bombus}}
-    TODO Interesting structures detected, functional roles in the british networks.
+    \only<1>{
-    \begin{figure}
+        \begin{figure}
-        \begin{subfigure}[t]{0.5\textwidth}
+            \begin{subfigure}[t]{0.5\textwidth}
-            \centering
+                \centering
-            \includegraphics[width=0.35\textwidth]{img/baldock/bombus-hortorum.jpeg}
+                \includegraphics[width=0.5\textwidth]{img/baldock/bombus-hortorum.jpeg}
-            \caption{\emph{Bombus Hortorum} or garden bumblebee}
+                \caption{\emph{Bombus Hortorum} or garden bumblebee}
-        \end{subfigure}\hfil
+            \end{subfigure}\hfill
-        \begin{subfigure}[t]{0.5\textwidth}
+            \begin{subfigure}[t]{0.5\textwidth}
-            \centering
+                \centering
-            \includegraphics[width=0.35\textwidth]{img/baldock/bombus-lapidarius.jpeg}
+                \includegraphics[width=0.5\textwidth]{img/baldock/bombus-lapidarius.jpeg}
-            \caption{\emph{Bombus Lapidarius} or red-tailed bumblebee}
+                \caption{\emph{Bombus Lapidarius} or red-tailed bumblebee}
-        \end{subfigure}
+            \end{subfigure}
-    \end{figure}
+        \end{figure}
+    }
+    \only<2->{
+        \begin{columns}
+
+            \begin{column}{0.35\textwidth}
+                \begin{figure}
+                    \onslide<3>{
+                        \begin{subfigure}[t]{0.5\textwidth}
+                            \centering
+                            \includegraphics[width=0.75\textwidth]{img/baldock/bombus-hortorum.jpeg}
+                            \caption{\emph{Bombus Hortorum} or garden bumblebee}
+                        \end{subfigure}
+                    }
+                    \onslide<4>{
+                        \begin{subfigure}[t]{0.5\textwidth}
+                            \centering
+                            \includegraphics[width=0.75\textwidth]{img/baldock/bombus-lapidarius.jpeg}
+                            \caption{\emph{Bombus Lapidarius} or red-tailed bumblebee}
+                        \end{subfigure}
+                    }
+                \end{figure}
+            \end{column}
+            \begin{column}{0.6\textwidth}
+                \begin{figure}
+                    \centering
+                    \includegraphics[width=0.8\textwidth]{tikz/applications/baldock/shared-iid.pdf}
+                    \caption{Shared structure of the 4 networks}
+                    \label{fig:shared}
+                \end{figure}
+            \end{column}
+        \end{columns}
+    }
 
 \end{frame}
 \begin{frame}