\hypertarget{application-to-data}{%
\section{\texorpdfstring{Application to
\cite{doreRelativeEffectsAnthropogenic2021}
data}{Application to  data}}\label{application-to-data}}

\label{sec:application-to-dorerelativeeffectsanthropogenic2021-data}

\hypertarget{clustering-with-model-iid}{%
\subsection{Clustering with model iid}\label{clustering-with-model-iid}}

With the \emph{iid-colBiSBM} we obtain 5 collections with the following
structures:

\subsubsection{Pour la collection 1 }

\includegraphics{./img/4c7e9819bb707372d35035947dfe7848b594b688.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
arroyo1982\_1+arroyo1982\_2+arroyo3\\
eberling1999\\
kato1990\\
petanidou1991\\
Junker2013\\
\addlinespace
bartomeus2008\\
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
Struck1994\\
Kato2000\\
\addlinespace
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
Baldock2011\_TB+Baldock2011\_JN\\
Dattilo2016\\
Devoto2005\_PP+Devoto2005\_AP\\
Devoto2005\_VT\\
\addlinespace
Devoto2005\_LL+Devoto2005\_CT\\
Freitas2006\\
Gibson2006\_TA2\\
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
\addlinespace
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
Pinheiro2008\\
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
Kato1993\\
KatoMiura1996\\
\addlinespace
Kakutani1990\\
Inoue1990\\
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
Souza\_cerrado\\
Souza\_chaco\\
\addlinespace
Souza\_pantanal\\
Souza\_vereda\\
Adedoja2019\\
Oleques2019\\
Baldock2019\_Bristol\\
\addlinespace
Baldock2019\_Edinburgh\\
Baldock2019\_Leeds\\
Baldock2019\_Reading\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 2 }

\includegraphics{./img/2e1295ef8143b9413e953a4c0c2da20d962158f6.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
dupont2003\\
herrera1988\\
inouye1988\\
medan2002ld\\
medan2002rb\\
\addlinespace
ramirez1992\\
ramirez1989\\
Burkle2013\\
Olito-Fox2014\\
Benadi2013\_3(1340m)\\
\addlinespace
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
\addlinespace
Devoto2005\_LQ\\
Devoto2005\_LT+Devoto2005\_LH\\
LemusJimenez2003\\
Lundgren2005\\
Marrero2013\\
\addlinespace
Trojelsgaard2015\_La Gomera\\
Trojelsgaard2015\_Gran Canaria\\
Zackenberg\\
Yoshihara2008\\
Fragoso\_RA1+Fragoso\_RD2\\
\addlinespace
PopicThesis\\
Pornon2017\\
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
Blumel2016\\
\addlinespace
Kantsa2018\\
Bennett2018\\
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
CordenizPicanco2018\_NatVeg\\
CordenizPicanco2018\_ExoFor\\
\addlinespace
Benadi2018\\
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
Jolls2019\\
Traveset2013\_Fernandina\\
Traveset2013\_Pinta\\
\addlinespace
Traveset2013\_Santiago\\
Traveset2013\_SantaCruz\\
Traveset2013\_SanCristobal\\
Simanonok2014\\
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 3 }

\includegraphics{./img/e69b18419936d1e08301cce4cb1c78acba2044c4.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
small1976\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 4 }

\includegraphics{./img/c1e07feffa95efd0355d15ccfec6dff687c1ef88.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
smith-ramirez2005\\
Weiner2011\\
Kaiser\_control+Kaiser\_restored\\
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
\addlinespace
Fang2012\\
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
Gibson2006\_GA1\\
\addlinespace
Gibson2006\_TA1\\
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
\addlinespace
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
Neli2014\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 5 }

\includegraphics{./img/be6eb1cef4cfa33f60e7f12e0d81b62fb4805328.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
olensen2002aig\\
olensen2002flo\\
vazquez2002\\
Shay2016\\
Gibson2006\_GA2\\
\addlinespace
Gibson2006\_SG\\
Trojelsgaard2015\_El Hierro\\
Trojelsgaard2015\_Fuerteventura\\
Trojelsgaard2015\_Western Sahara\\
Robinson2018\\
\addlinespace
CordenizPicanco2018\_NatFor\\
CordenizPicanco2018\_SemiPast\\
CordenizPicanco2018\_IntPast\\
Biella2019\\
Nel2017\\
\addlinespace
Villalobos2019\\
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
Ferrero2013\\
Sritongchuay2019\_near+Sritongchuay2019\_far\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\]

Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
connectivité).

Pour la collection 1 :
\[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\]
Pour la collection 2 :
\[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\]
Pour la collection 3 :
\[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\] Pour la
collection 4 :
\[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\]
Pour la collection 5 :
\[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\]
\#\#\# Comparaison avec des infos supplémentaires

\begin{figure}
\centering
\includegraphics{./img/85d1f067903ecf46ea5379990605207eea6dfa23.png}
\caption{plot of chunk Annual\_timespan\_plot}
\end{figure}

\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie}{%
\subsubsection{Répartition dans les clusters selon la
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie}}

\includegraphics{./img/0bd4d6aa00bf51bbf8e966b7664bea52ace7bede.png}\includegraphics{./img/ba57007c0b13d1fdaa06e6b689f6aaa356359870.png}

\includegraphics{./img/482a3d80d6f3afab8ca8818d634d42ce2fc8e6d0.png}\includegraphics{./img/05f987b57c85b14df8f5e89bf0e380ecc9721edc.png}

\hypertarget{tables}{%
\paragraph{Tables}\label{tables}}

\begin{verbatim}
## # A tibble: 9 × 25
##   Taxon       Collection_1_Bloc_1 Collection_1_Bloc_2 Collection_1_Bloc_3
##   <fct>                     <dbl>               <dbl>               <dbl>
## 1 Hymenoptera                  24                   0                  17
## 2 Diptera                       9                   0                   8
## 3 n.i.                          8                   0                  11
## 4 Lepidoptera                   7                   0                   6
## 5 Coleoptera                    0                   0                   0
## 6 Other                         0                   0                   0
## 7 Birds                        NA                  NA                  NA
## 8 Hemiptera                    NA                  NA                  NA
## 9 Squamata                     NA                  NA                  NA
## # ℹ 21 more variables: Collection_1_Bloc_4 <dbl>, Collection_1_Bloc_5 <dbl>,
## #   Collection_1_Bloc_6 <dbl>, Collection_1_Bloc_7 <dbl>,
## #   Collection_1_Bloc_8 <dbl>, Collection_2_Bloc_1 <dbl>,
## #   Collection_2_Bloc_2 <dbl>, Collection_2_Bloc_3 <dbl>,
## #   Collection_2_Bloc_4 <dbl>, Collection_3_Bloc_1 <dbl>,
## #   Collection_3_Bloc_2 <dbl>, Collection_4_Bloc_1 <dbl>,
## #   Collection_4_Bloc_2 <dbl>, Collection_4_Bloc_3 <dbl>, …
\end{verbatim}

\hypertarget{clustering-with-model-pi}{%
\subsection{Clustering with model pi}\label{clustering-with-model-pi}}

Avec le modèle \emph{pi} nous obtenons les 2 collections et les
structures suivantes:

\subsubsection{Pour la collection 1 }

\includegraphics{./img/c8d33c523cb7b1b863840ffe9f838cc1a4dafff2.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
arroyo1982\_1+arroyo1982\_2+arroyo3\\
eberling1999\\
inouye1988\\
kato1990\\
ramirez1992\\
\addlinespace
petanidou1991\\
ramirez1989\\
smith-ramirez2005\\
Junker2013\\
Kaiser\_control+Kaiser\_restored\\
\addlinespace
bartomeus2008\\
Olito-Fox2014\\
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
Benadi2013\_3(1340m)\\
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
\addlinespace
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
Fang2012\\
Shay2016\\
Struck1994\\
Kato2000\\
\addlinespace
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
Baldock2011\_TB+Baldock2011\_JN\\
\addlinespace
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
Dattilo2016\\
Devoto2005\_PP+Devoto2005\_AP\\
\addlinespace
Devoto2005\_VT\\
Devoto2005\_LL+Devoto2005\_CT\\
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
Freitas2006\\
Gibson2006\_TA1\\
\addlinespace
Gibson2006\_TA2\\
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
LemusJimenez2003\\
Marrero2013\\
\addlinespace
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
Pinheiro2008\\
Trojelsgaard2015\_La Gomera\\
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
\addlinespace
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
Zackenberg\\
Yoshihara2008\\
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
Kato1993\\
\addlinespace
KatoMiura1996\\
Kakutani1990\\
Inoue1990\\
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
PopicThesis\\
\addlinespace
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
Blumel2016\\
\addlinespace
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
Souza\_cerrado\\
Souza\_chaco\\
Souza\_pantanal\\
Souza\_vereda\\
\addlinespace
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
Bennett2018\\
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
Adedoja2019\\
CordenizPicanco2018\_NatVeg\\
\addlinespace
Benadi2018\\
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
Oleques2019\\
Jolls2019\\
Traveset2013\_Fernandina\\
\addlinespace
Traveset2013\_Santiago\\
Traveset2013\_SantaCruz\\
Traveset2013\_SanCristobal\\
Simanonok2014\\
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
\addlinespace
Baldock2019\_Bristol\\
Baldock2019\_Edinburgh\\
Baldock2019\_Leeds\\
Baldock2019\_Reading\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 2 }

\includegraphics{./img/66882e0b770527a45b5ba01441cbb86ed71491bd.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
dupont2003\\
herrera1988\\
medan2002ld\\
medan2002rb\\
olensen2002aig\\
\addlinespace
olensen2002flo\\
small1976\\
vazquez2002\\
Burkle2013\\
Weiner2011\\
\addlinespace
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
Devoto2005\_LQ\\
Devoto2005\_LT+Devoto2005\_LH\\
Gibson2006\_GA1\\
\addlinespace
Gibson2006\_GA2\\
Gibson2006\_SG\\
Lundgren2005\\
Trojelsgaard2015\_El Hierro\\
Trojelsgaard2015\_Gran Canaria\\
\addlinespace
Trojelsgaard2015\_Fuerteventura\\
Trojelsgaard2015\_Western Sahara\\
Fragoso\_RA1+Fragoso\_RD2\\
Pornon2017\\
Kantsa2018\\
\addlinespace
Robinson2018\\
CordenizPicanco2018\_NatFor\\
CordenizPicanco2018\_ExoFor\\
CordenizPicanco2018\_SemiPast\\
CordenizPicanco2018\_IntPast\\
\addlinespace
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
Biella2019\\
Nel2017\\
Villalobos2019\\
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
\addlinespace
Traveset2013\_Pinta\\
Ferrero2013\\
Neli2014\\
Sritongchuay2019\_near+Sritongchuay2019\_far\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\]

Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
connectivité).

Pour la collection 1 :
\[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\]
Pour la collection 2 :
\[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\]

\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}{%
\subsubsection{Répartition dans les clusters selon la
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}}

\includegraphics{./img/ff78b3a602b38666524674a6e38d94ee26963376.png}\includegraphics{./img/57ebffb0873b5079093d6f7d474c00142ee5e2ab.png}

\includegraphics{./img/1616c974be02698dd5c80725494a650ced9db214.png}\includegraphics{./img/b7dacdc5d5ad116b7b9b2c16dcd4084230bcf8cf.png}

\hypertarget{clustering-with-model-rho}{%
\subsection{Clustering with model rho}\label{clustering-with-model-rho}}

Avec le modèle \emph{rho} nous obtenons les 1 collections et les
structures suivantes:

\subsubsection{Pour la collection 1 }

\includegraphics{./img/ddafd83b5651fceb6261e4b7a7637e13859cac33.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
arroyo1982\_1+arroyo1982\_2+arroyo3\\
dupont2003\\
eberling1999\\
herrera1988\\
inouye1988\\
\addlinespace
kato1990\\
medan2002ld\\
medan2002rb\\
olensen2002aig\\
olensen2002flo\\
\addlinespace
ramirez1992\\
small1976\\
vazquez2002\\
petanidou1991\\
ramirez1989\\
\addlinespace
smith-ramirez2005\\
Burkle2013\\
Junker2013\\
Weiner2011\\
Kaiser\_control+Kaiser\_restored\\
\addlinespace
bartomeus2008\\
Olito-Fox2014\\
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
Benadi2013\_3(1340m)\\
\addlinespace
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
Fang2012\\
Shay2016\\
Struck1994\\
\addlinespace
Kato2000\\
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
\addlinespace
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
Baldock2011\_TB+Baldock2011\_JN\\
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
\addlinespace
Dattilo2016\\
Devoto2005\_LQ\\
Devoto2005\_PP+Devoto2005\_AP\\
Devoto2005\_LT+Devoto2005\_LH\\
Devoto2005\_VT\\
\addlinespace
Devoto2005\_LL+Devoto2005\_CT\\
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
Freitas2006\\
Gibson2006\_GA1\\
Gibson2006\_GA2\\
\addlinespace
Gibson2006\_SG\\
Gibson2006\_TA1\\
Gibson2006\_TA2\\
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
\addlinespace
LemusJimenez2003\\
Lundgren2005\\
Marrero2013\\
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
\addlinespace
Pinheiro2008\\
Trojelsgaard2015\_El Hierro\\
Trojelsgaard2015\_La Gomera\\
Trojelsgaard2015\_Gran Canaria\\
Trojelsgaard2015\_Fuerteventura\\
\addlinespace
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
Trojelsgaard2015\_Western Sahara\\
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
Zackenberg\\
Yoshihara2008\\
\addlinespace
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
Kato1993\\
KatoMiura1996\\
Kakutani1990\\
Inoue1990\\
\addlinespace
Fragoso\_RA1+Fragoso\_RD2\\
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
PopicThesis\\
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
\addlinespace
Pornon2017\\
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
Blumel2016\\
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
\addlinespace
Kantsa2018\\
Souza\_cerrado\\
Souza\_chaco\\
Souza\_pantanal\\
Souza\_vereda\\
\addlinespace
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
Robinson2018\\
Bennett2018\\
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
Adedoja2019\\
\addlinespace
CordenizPicanco2018\_NatFor\\
CordenizPicanco2018\_NatVeg\\
CordenizPicanco2018\_ExoFor\\
CordenizPicanco2018\_SemiPast\\
CordenizPicanco2018\_IntPast\\
\addlinespace
Benadi2018\\
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
Oleques2019\\
Biella2019\\
\addlinespace
Jolls2019\\
Nel2017\\
Villalobos2019\\
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
Traveset2013\_Fernandina\\
\addlinespace
Traveset2013\_Pinta\\
Traveset2013\_Santiago\\
Traveset2013\_SantaCruz\\
Traveset2013\_SanCristobal\\
Ferrero2013\\
\addlinespace
Simanonok2014\\
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
Neli2014\\
Sritongchuay2019\_near+Sritongchuay2019\_far\\
Baldock2019\_Bristol\\
\addlinespace
Baldock2019\_Edinburgh\\
Baldock2019\_Leeds\\
Baldock2019\_Reading\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\]

Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
connectivité).

Pour la collection 1 :
\[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\]

\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}{%
\subsubsection{Répartition dans les clusters selon la
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}}

\includegraphics{./img/35ffbce157e0b3bb2a32af4dbc7faa201c946a6b.png}\includegraphics{./img/62d45913b19d56f0ab48a367e53b8ed8fa83c2cc.png}

\includegraphics{./img/d1f52d1df28195df25bdfd2bf18f50a176d52c90.png}\includegraphics{./img/ce6571ff09f37636eff0631a2269c77055df1403.png}

\hypertarget{clustering-with-model-pirho}{%
\subsection{Clustering with model
pirho}\label{clustering-with-model-pirho}}

Avec le modèle \emph{pirho} nous obtenons les 15 collections et les
structures suivantes:

\subsubsection{Pour la collection 1 }

\includegraphics{./img/1b76f16cf61f19fcd2cd382227f1c1dafbdd86b8.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
arroyo1982\_1+arroyo1982\_2+arroyo3\\
dupont2003\\
petanidou1991\\
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
\addlinespace
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
Pinheiro2008\\
Souza\_pantanal\\
Robinson2018\\
Jolls2019\\
\addlinespace
Traveset2013\_Fernandina\\
Baldock2019\_Leeds\\
Baldock2019\_Reading\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 2 }

\includegraphics{./img/9a6b30dad9046620bd49013adaef8960862792a2.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Benadi2013\_3(1340m)\\
Trojelsgaard2015\_La Gomera\\
CordenizPicanco2018\_SemiPast\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 3 }

\includegraphics{./img/b8abb8188b0bc33c6f0544fed1eb1ff74aac349a.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Kato2000\\
Freitas2006\\
Inoue1990\\
Souza\_cerrado\\
Adedoja2019\\
\addlinespace
Baldock2019\_Bristol\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 4 }

\includegraphics{./img/73d8481e68a1a4993a0eda2edcc5b2a65ac241c2.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
LemusJimenez2003\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 5 }

\includegraphics{./img/f5433f933dadae33c549c51d26316f90eb2bbdcd.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
inouye1988\\
Junker2013\\
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
Kakutani1990\\
\addlinespace
Fragoso\_RA1+Fragoso\_RD2\\
Souza\_chaco\\
Oleques2019\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 6 }

\includegraphics{./img/9b8b977552f9856c8f2569fd0a1796c7df59125e.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
medan2002ld\\
small1976\\
smith-ramirez2005\\
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
Shay2016\\
\addlinespace
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
Lundgren2005\\
Zackenberg\\
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
\addlinespace
Bennett2018\\
CordenizPicanco2018\_NatFor\\
CordenizPicanco2018\_ExoFor\\
CordenizPicanco2018\_IntPast\\
Benadi2018\\
\addlinespace
Villalobos2019\\
Traveset2013\_Santiago\\
Traveset2013\_SantaCruz\\
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
Sritongchuay2019\_near+Sritongchuay2019\_far\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 7 }

\includegraphics{./img/2bc2aa5f9522a80d234598c960d2b148c78a0bf0.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
medan2002rb\\
olensen2002flo\\
vazquez2002\\
Trojelsgaard2015\_Gran Canaria\\
Trojelsgaard2015\_Western Sahara\\
\addlinespace
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 8 }

\includegraphics{./img/2435c20b207156887cade4b89b0572d42c93ab82.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Weiner2011\\
Kaiser\_control+Kaiser\_restored\\
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
Fang2012\\
\addlinespace
Gibson2006\_SG\\
Gibson2006\_TA1\\
Trojelsgaard2015\_Fuerteventura\\
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
Biella2019\\
\addlinespace
Nel2017\\
Ferrero2013\\
Neli2014\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 9 }

\includegraphics{./img/01cf8becd8b4fa7e13437d68ce7a48e6365fc5d8.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
eberling1999\\
ramirez1992\\
Struck1994\\
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
Devoto2005\_PP+Devoto2005\_AP\\
\addlinespace
Devoto2005\_VT\\
Gibson2006\_TA2\\
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
Yoshihara2008\\
PopicThesis\\
\addlinespace
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
Souza\_vereda\\
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 10 }

\includegraphics{./img/f191d6381b05b4f2f4139e717eebf1075211d7ea.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
herrera1988\\
Burkle2013\\
bartomeus2008\\
Olito-Fox2014\\
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
\addlinespace
Baldock2011\_TB+Baldock2011\_JN\\
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
Devoto2005\_LQ\\
Devoto2005\_LT+Devoto2005\_LH\\
\addlinespace
Devoto2005\_LL+Devoto2005\_CT\\
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
Gibson2006\_GA1\\
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
Marrero2013\\
\addlinespace
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
Pornon2017\\
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
\addlinespace
Blumel2016\\
Kantsa2018\\
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
CordenizPicanco2018\_NatVeg\\
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
\addlinespace
Traveset2013\_Pinta\\
Traveset2013\_SanCristobal\\
Simanonok2014\\
Baldock2019\_Edinburgh\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 11 }

\includegraphics{./img/b890876aef1a920f5fdc0fb91d549ad59455c587.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
kato1990\\
ramirez1989\\
Kato1993\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 12 }

\includegraphics{./img/63fe35c05911cc6ad732c2424d821e1ff6017bcf.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
Dattilo2016\\
KatoMiura1996\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 13 }

\includegraphics{./img/3c15b096f5435091aae32ed4477d5df277c2af82.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
olensen2002aig\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 14 }

\includegraphics{./img/888bd40e8c6409a43aae4aa9744e362b2ea7da34.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Trojelsgaard2015\_El Hierro\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\]

\subsubsection{Pour la collection 15 }

\includegraphics{./img/be03e1e125628e702f825f4e55f2a3d50d226045.png}\newline \tiny

\begin{tabular}{l}
\toprule
Networks\\
\midrule
Gibson2006\_GA2\\
\bottomrule
\end{tabular}

\normalsize\newline\[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\]

Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
connectivité).

Pour la collection 1 :
\[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\]
Pour la collection 2 :
\[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\] Pour la
collection 3 :
\[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\]
Pour la collection 4 :
\[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\]
Pour la collection 5 :
\[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\]
Pour la collection 6 :
\[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\]
Pour la collection 7 :
\[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\]
Pour la collection 8 :
\[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\]
Pour la collection 9 :
\[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\]
Pour la collection 10 :
\[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\]
Pour la collection 11 :
\[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\]
Pour la collection 12 :
\[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\]
Pour la collection 13 : \[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\]
Pour la collection 14 : \[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\]
Pour la collection 15 :
\[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\]

\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}{%
\subsubsection{Répartition dans les clusters selon la
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}}

\includegraphics{./img/337973465a11f78731e92a7e62b1f4c2164ab43e.png}\includegraphics{./img/09bed9592345eff7f0e23841c310114fc4b5773d.png}

\includegraphics{./img/9e913a77139e5e0a619c6c0e9beef79f87c6bb61.png}\includegraphics{./img/c3c10578cbfaf01a313454190bda1efad0227b03.png}
