1031 lines
41 KiB
TeX
1031 lines
41 KiB
TeX
\hypertarget{application-to-data}{%
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\section{\texorpdfstring{Application to
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\cite{doreRelativeEffectsAnthropogenic2021}
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data}{Application to data}}\label{application-to-data}}
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\label{sec:application-to-dorerelativeeffectsanthropogenic2021-data}
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\hypertarget{clustering-with-model-iid}{%
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\subsection{Clustering with model iid}\label{clustering-with-model-iid}}
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With the \emph{iid-colBiSBM} we obtain 5 collections with the following
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structures:
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\subsubsection{Pour la collection 1 }
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\includegraphics{./img/4c7e9819bb707372d35035947dfe7848b594b688.png}\newline \tiny
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\begin{tabular}{l}
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\toprule
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Networks\\
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\midrule
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arroyo1982\_1+arroyo1982\_2+arroyo3\\
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eberling1999\\
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kato1990\\
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petanidou1991\\
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Junker2013\\
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\addlinespace
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bartomeus2008\\
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Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
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Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
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Struck1994\\
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Kato2000\\
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\addlinespace
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Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
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Baldock2011\_TB+Baldock2011\_JN\\
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Dattilo2016\\
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Devoto2005\_PP+Devoto2005\_AP\\
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Devoto2005\_VT\\
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\addlinespace
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Devoto2005\_LL+Devoto2005\_CT\\
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Freitas2006\\
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Gibson2006\_TA2\\
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Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
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MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
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\addlinespace
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Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
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Pinheiro2008\\
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Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
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Kato1993\\
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KatoMiura1996\\
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\addlinespace
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Kakutani1990\\
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Inoue1990\\
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Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
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Souza\_cerrado\\
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Souza\_chaco\\
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\addlinespace
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Souza\_pantanal\\
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Souza\_vereda\\
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Adedoja2019\\
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Oleques2019\\
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Baldock2019\_Bristol\\
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\addlinespace
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Baldock2019\_Edinburgh\\
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Baldock2019\_Leeds\\
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Baldock2019\_Reading\\
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\bottomrule
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\end{tabular}
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\normalsize\newline\[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\]
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\subsubsection{Pour la collection 2 }
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\includegraphics{./img/2e1295ef8143b9413e953a4c0c2da20d962158f6.png}\newline \tiny
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\begin{tabular}{l}
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\toprule
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Networks\\
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\midrule
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dupont2003\\
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herrera1988\\
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inouye1988\\
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medan2002ld\\
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medan2002rb\\
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\addlinespace
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ramirez1992\\
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ramirez1989\\
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Burkle2013\\
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Olito-Fox2014\\
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Benadi2013\_3(1340m)\\
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\addlinespace
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Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
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Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
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Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
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Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
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Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
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\addlinespace
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Devoto2005\_LQ\\
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Devoto2005\_LT+Devoto2005\_LH\\
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LemusJimenez2003\\
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Lundgren2005\\
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Marrero2013\\
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\addlinespace
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Trojelsgaard2015\_La Gomera\\
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Trojelsgaard2015\_Gran Canaria\\
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Zackenberg\\
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Yoshihara2008\\
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Fragoso\_RA1+Fragoso\_RD2\\
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\addlinespace
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PopicThesis\\
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Pornon2017\\
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Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
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Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
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Blumel2016\\
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\addlinespace
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Kantsa2018\\
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Bennett2018\\
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Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
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CordenizPicanco2018\_NatVeg\\
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CordenizPicanco2018\_ExoFor\\
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\addlinespace
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Benadi2018\\
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Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
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Jolls2019\\
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Traveset2013\_Fernandina\\
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Traveset2013\_Pinta\\
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\addlinespace
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Traveset2013\_Santiago\\
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Traveset2013\_SantaCruz\\
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Traveset2013\_SanCristobal\\
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Simanonok2014\\
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Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
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\bottomrule
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\end{tabular}
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\normalsize\newline\[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\]
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\subsubsection{Pour la collection 3 }
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\includegraphics{./img/e69b18419936d1e08301cce4cb1c78acba2044c4.png}\newline \tiny
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\begin{tabular}{l}
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\toprule
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Networks\\
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\midrule
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small1976\\
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\bottomrule
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\end{tabular}
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\normalsize\newline\[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\]
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\subsubsection{Pour la collection 4 }
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\includegraphics{./img/c1e07feffa95efd0355d15ccfec6dff687c1ef88.png}\newline \tiny
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\begin{tabular}{l}
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\toprule
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Networks\\
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\midrule
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smith-ramirez2005\\
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Weiner2011\\
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Kaiser\_control+Kaiser\_restored\\
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Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
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Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
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\addlinespace
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Fang2012\\
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Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
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Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
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Dupont2009\_IsenBjerg+Dupont2009\_Other\\
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Gibson2006\_GA1\\
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\addlinespace
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Gibson2006\_TA1\\
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LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
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Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
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Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
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Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
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\addlinespace
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Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
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Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
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Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
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Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
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Neli2014\\
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\bottomrule
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\end{tabular}
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\normalsize\newline\[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\]
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\subsubsection{Pour la collection 5 }
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\includegraphics{./img/be6eb1cef4cfa33f60e7f12e0d81b62fb4805328.png}\newline \tiny
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|
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\begin{tabular}{l}
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||
\toprule
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Networks\\
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\midrule
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olensen2002aig\\
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olensen2002flo\\
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vazquez2002\\
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Shay2016\\
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Gibson2006\_GA2\\
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\addlinespace
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Gibson2006\_SG\\
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Trojelsgaard2015\_El Hierro\\
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Trojelsgaard2015\_Fuerteventura\\
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Trojelsgaard2015\_Western Sahara\\
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Robinson2018\\
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\addlinespace
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CordenizPicanco2018\_NatFor\\
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CordenizPicanco2018\_SemiPast\\
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CordenizPicanco2018\_IntPast\\
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Biella2019\\
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Nel2017\\
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\addlinespace
|
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Villalobos2019\\
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LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
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Ferrero2013\\
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Sritongchuay2019\_near+Sritongchuay2019\_far\\
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\bottomrule
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\end{tabular}
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\normalsize\newline\[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\]
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Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
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connectivité).
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Pour la collection 1 :
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\[\begin{pmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{pmatrix}\]
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Pour la collection 2 :
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\[\begin{pmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{pmatrix}\]
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Pour la collection 3 :
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\[\begin{pmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{pmatrix}\] Pour la
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collection 4 :
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\[\begin{pmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{pmatrix}\]
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Pour la collection 5 :
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\[\begin{pmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{pmatrix}\]
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\#\#\# Comparaison avec des infos supplémentaires
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\begin{figure}
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\centering
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\includegraphics{./img/85d1f067903ecf46ea5379990605207eea6dfa23.png}
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\caption{plot of chunk Annual\_timespan\_plot}
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\end{figure}
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\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie}{%
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\subsubsection{Répartition dans les clusters selon la
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taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie}}
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|
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\includegraphics{./img/0bd4d6aa00bf51bbf8e966b7664bea52ace7bede.png}\includegraphics{./img/ba57007c0b13d1fdaa06e6b689f6aaa356359870.png}
|
||
|
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\includegraphics{./img/482a3d80d6f3afab8ca8818d634d42ce2fc8e6d0.png}\includegraphics{./img/05f987b57c85b14df8f5e89bf0e380ecc9721edc.png}
|
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|
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\hypertarget{tables}{%
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\paragraph{Tables}\label{tables}}
|
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|
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\begin{verbatim}
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## # A tibble: 9 × 25
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## Taxon Collection_1_Bloc_1 Collection_1_Bloc_2 Collection_1_Bloc_3
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## <fct> <dbl> <dbl> <dbl>
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## 1 Hymenoptera 24 0 17
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## 2 Diptera 9 0 8
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## 3 n.i. 8 0 11
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## 4 Lepidoptera 7 0 6
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## 5 Coleoptera 0 0 0
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## 6 Other 0 0 0
|
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## 7 Birds NA NA NA
|
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## 8 Hemiptera NA NA NA
|
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## 9 Squamata NA NA NA
|
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## # ℹ 21 more variables: Collection_1_Bloc_4 <dbl>, Collection_1_Bloc_5 <dbl>,
|
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## # Collection_1_Bloc_6 <dbl>, Collection_1_Bloc_7 <dbl>,
|
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## # Collection_1_Bloc_8 <dbl>, Collection_2_Bloc_1 <dbl>,
|
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## # Collection_2_Bloc_2 <dbl>, Collection_2_Bloc_3 <dbl>,
|
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## # Collection_2_Bloc_4 <dbl>, Collection_3_Bloc_1 <dbl>,
|
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## # Collection_3_Bloc_2 <dbl>, Collection_4_Bloc_1 <dbl>,
|
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## # Collection_4_Bloc_2 <dbl>, Collection_4_Bloc_3 <dbl>, …
|
||
\end{verbatim}
|
||
|
||
\hypertarget{clustering-with-model-pi}{%
|
||
\subsection{Clustering with model pi}\label{clustering-with-model-pi}}
|
||
|
||
Avec le modèle \emph{pi} nous obtenons les 2 collections et les
|
||
structures suivantes:
|
||
|
||
\subsubsection{Pour la collection 1 }
|
||
|
||
\includegraphics{./img/c8d33c523cb7b1b863840ffe9f838cc1a4dafff2.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
||
eberling1999\\
|
||
inouye1988\\
|
||
kato1990\\
|
||
ramirez1992\\
|
||
\addlinespace
|
||
petanidou1991\\
|
||
ramirez1989\\
|
||
smith-ramirez2005\\
|
||
Junker2013\\
|
||
Kaiser\_control+Kaiser\_restored\\
|
||
\addlinespace
|
||
bartomeus2008\\
|
||
Olito-Fox2014\\
|
||
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
||
Benadi2013\_3(1340m)\\
|
||
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
||
\addlinespace
|
||
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
||
Fang2012\\
|
||
Shay2016\\
|
||
Struck1994\\
|
||
Kato2000\\
|
||
\addlinespace
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
||
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
||
Baldock2011\_TB+Baldock2011\_JN\\
|
||
\addlinespace
|
||
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
||
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
||
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
||
Dattilo2016\\
|
||
Devoto2005\_PP+Devoto2005\_AP\\
|
||
\addlinespace
|
||
Devoto2005\_VT\\
|
||
Devoto2005\_LL+Devoto2005\_CT\\
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
||
Freitas2006\\
|
||
Gibson2006\_TA1\\
|
||
\addlinespace
|
||
Gibson2006\_TA2\\
|
||
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
||
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
||
LemusJimenez2003\\
|
||
Marrero2013\\
|
||
\addlinespace
|
||
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
||
Pinheiro2008\\
|
||
Trojelsgaard2015\_La Gomera\\
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
||
\addlinespace
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
||
Zackenberg\\
|
||
Yoshihara2008\\
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
||
Kato1993\\
|
||
\addlinespace
|
||
KatoMiura1996\\
|
||
Kakutani1990\\
|
||
Inoue1990\\
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
||
PopicThesis\\
|
||
\addlinespace
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
||
Blumel2016\\
|
||
\addlinespace
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
||
Souza\_cerrado\\
|
||
Souza\_chaco\\
|
||
Souza\_pantanal\\
|
||
Souza\_vereda\\
|
||
\addlinespace
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
||
Bennett2018\\
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
||
Adedoja2019\\
|
||
CordenizPicanco2018\_NatVeg\\
|
||
\addlinespace
|
||
Benadi2018\\
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
||
Oleques2019\\
|
||
Jolls2019\\
|
||
Traveset2013\_Fernandina\\
|
||
\addlinespace
|
||
Traveset2013\_Santiago\\
|
||
Traveset2013\_SantaCruz\\
|
||
Traveset2013\_SanCristobal\\
|
||
Simanonok2014\\
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
||
\addlinespace
|
||
Baldock2019\_Bristol\\
|
||
Baldock2019\_Edinburgh\\
|
||
Baldock2019\_Leeds\\
|
||
Baldock2019\_Reading\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 2 }
|
||
|
||
\includegraphics{./img/66882e0b770527a45b5ba01441cbb86ed71491bd.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
dupont2003\\
|
||
herrera1988\\
|
||
medan2002ld\\
|
||
medan2002rb\\
|
||
olensen2002aig\\
|
||
\addlinespace
|
||
olensen2002flo\\
|
||
small1976\\
|
||
vazquez2002\\
|
||
Burkle2013\\
|
||
Weiner2011\\
|
||
\addlinespace
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
||
Devoto2005\_LQ\\
|
||
Devoto2005\_LT+Devoto2005\_LH\\
|
||
Gibson2006\_GA1\\
|
||
\addlinespace
|
||
Gibson2006\_GA2\\
|
||
Gibson2006\_SG\\
|
||
Lundgren2005\\
|
||
Trojelsgaard2015\_El Hierro\\
|
||
Trojelsgaard2015\_Gran Canaria\\
|
||
\addlinespace
|
||
Trojelsgaard2015\_Fuerteventura\\
|
||
Trojelsgaard2015\_Western Sahara\\
|
||
Fragoso\_RA1+Fragoso\_RD2\\
|
||
Pornon2017\\
|
||
Kantsa2018\\
|
||
\addlinespace
|
||
Robinson2018\\
|
||
CordenizPicanco2018\_NatFor\\
|
||
CordenizPicanco2018\_ExoFor\\
|
||
CordenizPicanco2018\_SemiPast\\
|
||
CordenizPicanco2018\_IntPast\\
|
||
\addlinespace
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
||
Biella2019\\
|
||
Nel2017\\
|
||
Villalobos2019\\
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
||
\addlinespace
|
||
Traveset2013\_Pinta\\
|
||
Ferrero2013\\
|
||
Neli2014\\
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\]
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{pmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{pmatrix}\]
|
||
Pour la collection 2 :
|
||
\[\begin{pmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{pmatrix}\]
|
||
|
||
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}{%
|
||
\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}}
|
||
|
||
\includegraphics{./img/ff78b3a602b38666524674a6e38d94ee26963376.png}\includegraphics{./img/57ebffb0873b5079093d6f7d474c00142ee5e2ab.png}
|
||
|
||
\includegraphics{./img/1616c974be02698dd5c80725494a650ced9db214.png}\includegraphics{./img/b7dacdc5d5ad116b7b9b2c16dcd4084230bcf8cf.png}
|
||
|
||
\hypertarget{clustering-with-model-rho}{%
|
||
\subsection{Clustering with model rho}\label{clustering-with-model-rho}}
|
||
|
||
Avec le modèle \emph{rho} nous obtenons les 1 collections et les
|
||
structures suivantes:
|
||
|
||
\subsubsection{Pour la collection 1 }
|
||
|
||
\includegraphics{./img/ddafd83b5651fceb6261e4b7a7637e13859cac33.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
||
dupont2003\\
|
||
eberling1999\\
|
||
herrera1988\\
|
||
inouye1988\\
|
||
\addlinespace
|
||
kato1990\\
|
||
medan2002ld\\
|
||
medan2002rb\\
|
||
olensen2002aig\\
|
||
olensen2002flo\\
|
||
\addlinespace
|
||
ramirez1992\\
|
||
small1976\\
|
||
vazquez2002\\
|
||
petanidou1991\\
|
||
ramirez1989\\
|
||
\addlinespace
|
||
smith-ramirez2005\\
|
||
Burkle2013\\
|
||
Junker2013\\
|
||
Weiner2011\\
|
||
Kaiser\_control+Kaiser\_restored\\
|
||
\addlinespace
|
||
bartomeus2008\\
|
||
Olito-Fox2014\\
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
||
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
||
Benadi2013\_3(1340m)\\
|
||
\addlinespace
|
||
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
||
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
||
Fang2012\\
|
||
Shay2016\\
|
||
Struck1994\\
|
||
\addlinespace
|
||
Kato2000\\
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
||
\addlinespace
|
||
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
||
Baldock2011\_TB+Baldock2011\_JN\\
|
||
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
||
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
||
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
||
\addlinespace
|
||
Dattilo2016\\
|
||
Devoto2005\_LQ\\
|
||
Devoto2005\_PP+Devoto2005\_AP\\
|
||
Devoto2005\_LT+Devoto2005\_LH\\
|
||
Devoto2005\_VT\\
|
||
\addlinespace
|
||
Devoto2005\_LL+Devoto2005\_CT\\
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
||
Freitas2006\\
|
||
Gibson2006\_GA1\\
|
||
Gibson2006\_GA2\\
|
||
\addlinespace
|
||
Gibson2006\_SG\\
|
||
Gibson2006\_TA1\\
|
||
Gibson2006\_TA2\\
|
||
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
||
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
||
\addlinespace
|
||
LemusJimenez2003\\
|
||
Lundgren2005\\
|
||
Marrero2013\\
|
||
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
||
\addlinespace
|
||
Pinheiro2008\\
|
||
Trojelsgaard2015\_El Hierro\\
|
||
Trojelsgaard2015\_La Gomera\\
|
||
Trojelsgaard2015\_Gran Canaria\\
|
||
Trojelsgaard2015\_Fuerteventura\\
|
||
\addlinespace
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
||
Trojelsgaard2015\_Western Sahara\\
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
||
Zackenberg\\
|
||
Yoshihara2008\\
|
||
\addlinespace
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
||
Kato1993\\
|
||
KatoMiura1996\\
|
||
Kakutani1990\\
|
||
Inoue1990\\
|
||
\addlinespace
|
||
Fragoso\_RA1+Fragoso\_RD2\\
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
||
PopicThesis\\
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
||
\addlinespace
|
||
Pornon2017\\
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
||
Blumel2016\\
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
||
\addlinespace
|
||
Kantsa2018\\
|
||
Souza\_cerrado\\
|
||
Souza\_chaco\\
|
||
Souza\_pantanal\\
|
||
Souza\_vereda\\
|
||
\addlinespace
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
||
Robinson2018\\
|
||
Bennett2018\\
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
||
Adedoja2019\\
|
||
\addlinespace
|
||
CordenizPicanco2018\_NatFor\\
|
||
CordenizPicanco2018\_NatVeg\\
|
||
CordenizPicanco2018\_ExoFor\\
|
||
CordenizPicanco2018\_SemiPast\\
|
||
CordenizPicanco2018\_IntPast\\
|
||
\addlinespace
|
||
Benadi2018\\
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
||
Oleques2019\\
|
||
Biella2019\\
|
||
\addlinespace
|
||
Jolls2019\\
|
||
Nel2017\\
|
||
Villalobos2019\\
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
||
Traveset2013\_Fernandina\\
|
||
\addlinespace
|
||
Traveset2013\_Pinta\\
|
||
Traveset2013\_Santiago\\
|
||
Traveset2013\_SantaCruz\\
|
||
Traveset2013\_SanCristobal\\
|
||
Ferrero2013\\
|
||
\addlinespace
|
||
Simanonok2014\\
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
||
Neli2014\\
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
||
Baldock2019\_Bristol\\
|
||
\addlinespace
|
||
Baldock2019\_Edinburgh\\
|
||
Baldock2019\_Leeds\\
|
||
Baldock2019\_Reading\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\]
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{pmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{pmatrix}\]
|
||
|
||
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}{%
|
||
\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}}
|
||
|
||
\includegraphics{./img/35ffbce157e0b3bb2a32af4dbc7faa201c946a6b.png}\includegraphics{./img/62d45913b19d56f0ab48a367e53b8ed8fa83c2cc.png}
|
||
|
||
\includegraphics{./img/d1f52d1df28195df25bdfd2bf18f50a176d52c90.png}\includegraphics{./img/ce6571ff09f37636eff0631a2269c77055df1403.png}
|
||
|
||
\hypertarget{clustering-with-model-pirho}{%
|
||
\subsection{Clustering with model
|
||
pirho}\label{clustering-with-model-pirho}}
|
||
|
||
Avec le modèle \emph{pirho} nous obtenons les 15 collections et les
|
||
structures suivantes:
|
||
|
||
\subsubsection{Pour la collection 1 }
|
||
|
||
\includegraphics{./img/1b76f16cf61f19fcd2cd382227f1c1dafbdd86b8.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
||
dupont2003\\
|
||
petanidou1991\\
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
||
\addlinespace
|
||
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
||
Pinheiro2008\\
|
||
Souza\_pantanal\\
|
||
Robinson2018\\
|
||
Jolls2019\\
|
||
\addlinespace
|
||
Traveset2013\_Fernandina\\
|
||
Baldock2019\_Leeds\\
|
||
Baldock2019\_Reading\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 2 }
|
||
|
||
\includegraphics{./img/9a6b30dad9046620bd49013adaef8960862792a2.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Benadi2013\_3(1340m)\\
|
||
Trojelsgaard2015\_La Gomera\\
|
||
CordenizPicanco2018\_SemiPast\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 3 }
|
||
|
||
\includegraphics{./img/b8abb8188b0bc33c6f0544fed1eb1ff74aac349a.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Kato2000\\
|
||
Freitas2006\\
|
||
Inoue1990\\
|
||
Souza\_cerrado\\
|
||
Adedoja2019\\
|
||
\addlinespace
|
||
Baldock2019\_Bristol\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 4 }
|
||
|
||
\includegraphics{./img/73d8481e68a1a4993a0eda2edcc5b2a65ac241c2.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
||
LemusJimenez2003\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 5 }
|
||
|
||
\includegraphics{./img/f5433f933dadae33c549c51d26316f90eb2bbdcd.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
inouye1988\\
|
||
Junker2013\\
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
||
Kakutani1990\\
|
||
\addlinespace
|
||
Fragoso\_RA1+Fragoso\_RD2\\
|
||
Souza\_chaco\\
|
||
Oleques2019\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 6 }
|
||
|
||
\includegraphics{./img/9b8b977552f9856c8f2569fd0a1796c7df59125e.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
medan2002ld\\
|
||
small1976\\
|
||
smith-ramirez2005\\
|
||
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
||
Shay2016\\
|
||
\addlinespace
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
||
Lundgren2005\\
|
||
Zackenberg\\
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
||
\addlinespace
|
||
Bennett2018\\
|
||
CordenizPicanco2018\_NatFor\\
|
||
CordenizPicanco2018\_ExoFor\\
|
||
CordenizPicanco2018\_IntPast\\
|
||
Benadi2018\\
|
||
\addlinespace
|
||
Villalobos2019\\
|
||
Traveset2013\_Santiago\\
|
||
Traveset2013\_SantaCruz\\
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 7 }
|
||
|
||
\includegraphics{./img/2bc2aa5f9522a80d234598c960d2b148c78a0bf0.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
medan2002rb\\
|
||
olensen2002flo\\
|
||
vazquez2002\\
|
||
Trojelsgaard2015\_Gran Canaria\\
|
||
Trojelsgaard2015\_Western Sahara\\
|
||
\addlinespace
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 8 }
|
||
|
||
\includegraphics{./img/2435c20b207156887cade4b89b0572d42c93ab82.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Weiner2011\\
|
||
Kaiser\_control+Kaiser\_restored\\
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
||
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
||
Fang2012\\
|
||
\addlinespace
|
||
Gibson2006\_SG\\
|
||
Gibson2006\_TA1\\
|
||
Trojelsgaard2015\_Fuerteventura\\
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
||
Biella2019\\
|
||
\addlinespace
|
||
Nel2017\\
|
||
Ferrero2013\\
|
||
Neli2014\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 9 }
|
||
|
||
\includegraphics{./img/01cf8becd8b4fa7e13437d68ce7a48e6365fc5d8.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
eberling1999\\
|
||
ramirez1992\\
|
||
Struck1994\\
|
||
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
||
Devoto2005\_PP+Devoto2005\_AP\\
|
||
\addlinespace
|
||
Devoto2005\_VT\\
|
||
Gibson2006\_TA2\\
|
||
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
||
Yoshihara2008\\
|
||
PopicThesis\\
|
||
\addlinespace
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
||
Souza\_vereda\\
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 10 }
|
||
|
||
\includegraphics{./img/f191d6381b05b4f2f4139e717eebf1075211d7ea.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
herrera1988\\
|
||
Burkle2013\\
|
||
bartomeus2008\\
|
||
Olito-Fox2014\\
|
||
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
||
\addlinespace
|
||
Baldock2011\_TB+Baldock2011\_JN\\
|
||
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
||
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
||
Devoto2005\_LQ\\
|
||
Devoto2005\_LT+Devoto2005\_LH\\
|
||
\addlinespace
|
||
Devoto2005\_LL+Devoto2005\_CT\\
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
||
Gibson2006\_GA1\\
|
||
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
||
Marrero2013\\
|
||
\addlinespace
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
||
Pornon2017\\
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
||
\addlinespace
|
||
Blumel2016\\
|
||
Kantsa2018\\
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
||
CordenizPicanco2018\_NatVeg\\
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
||
\addlinespace
|
||
Traveset2013\_Pinta\\
|
||
Traveset2013\_SanCristobal\\
|
||
Simanonok2014\\
|
||
Baldock2019\_Edinburgh\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 11 }
|
||
|
||
\includegraphics{./img/b890876aef1a920f5fdc0fb91d549ad59455c587.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
kato1990\\
|
||
ramirez1989\\
|
||
Kato1993\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 12 }
|
||
|
||
\includegraphics{./img/63fe35c05911cc6ad732c2424d821e1ff6017bcf.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
||
Dattilo2016\\
|
||
KatoMiura1996\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 13 }
|
||
|
||
\includegraphics{./img/3c15b096f5435091aae32ed4477d5df277c2af82.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
olensen2002aig\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 14 }
|
||
|
||
\includegraphics{./img/888bd40e8c6409a43aae4aa9744e362b2ea7da34.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Trojelsgaard2015\_El Hierro\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\]
|
||
|
||
\subsubsection{Pour la collection 15 }
|
||
|
||
\includegraphics{./img/be03e1e125628e702f825f4e55f2a3d50d226045.png}\newline \tiny
|
||
|
||
\begin{tabular}{l}
|
||
\toprule
|
||
Networks\\
|
||
\midrule
|
||
Gibson2006\_GA2\\
|
||
\bottomrule
|
||
\end{tabular}
|
||
|
||
\normalsize\newline\[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\]
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{pmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{pmatrix}\]
|
||
Pour la collection 2 :
|
||
\[\begin{pmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{pmatrix}\] Pour la
|
||
collection 3 :
|
||
\[\begin{pmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{pmatrix}\]
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Pour la collection 4 :
|
||
\[\begin{pmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{pmatrix}\]
|
||
Pour la collection 5 :
|
||
\[\begin{pmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{pmatrix}\]
|
||
Pour la collection 6 :
|
||
\[\begin{pmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{pmatrix}\]
|
||
Pour la collection 7 :
|
||
\[\begin{pmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{pmatrix}\]
|
||
Pour la collection 8 :
|
||
\[\begin{pmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{pmatrix}\]
|
||
Pour la collection 9 :
|
||
\[\begin{pmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{pmatrix}\]
|
||
Pour la collection 10 :
|
||
\[\begin{pmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{pmatrix}\]
|
||
Pour la collection 11 :
|
||
\[\begin{pmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{pmatrix}\]
|
||
Pour la collection 12 :
|
||
\[\begin{pmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{pmatrix}\]
|
||
Pour la collection 13 : \[\begin{pmatrix} 0.78 \\0.19 \\ \end{pmatrix}\]
|
||
Pour la collection 14 : \[\begin{pmatrix} 0.44 &0.08 \\ \end{pmatrix}\]
|
||
Pour la collection 15 :
|
||
\[\begin{pmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{pmatrix}\]
|
||
|
||
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}{%
|
||
\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}}
|
||
|
||
\includegraphics{./img/337973465a11f78731e92a7e62b1f4c2164ab43e.png}\includegraphics{./img/09bed9592345eff7f0e23841c310114fc4b5773d.png}
|
||
|
||
\includegraphics{./img/9e913a77139e5e0a619c6c0e9beef79f87c6bb61.png}\includegraphics{./img/c3c10578cbfaf01a313454190bda1efad0227b03.png}
|