1015 lines
42 KiB
TeX
1015 lines
42 KiB
TeX
\hypertarget{clustering-avec-le-moduxe8le-iid}{%
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\subsection{Clustering avec le modèle
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iid}\label{clustering-avec-le-moduxe8le-iid}}
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Avec le modèle \emph{iid} nous obtenons les 5 collections et les
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structures suivantes:
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Pour la collection 1
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\begin{figure}
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\centering
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\includegraphics{figure/iid_meso_plot-1.png}
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\caption{Collection 1 - iid}
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\end{figure}
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\begin{longtable}[]{@{}l@{}}
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
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arroyo1982\_1+arroyo1982\_2+arroyo3\tabularnewline
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eberling1999\tabularnewline
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kato1990\tabularnewline
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petanidou1991\tabularnewline
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Junker2013\tabularnewline
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bartomeus2008\tabularnewline
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Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\tabularnewline
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Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\tabularnewline
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Struck1994\tabularnewline
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Kato2000\tabularnewline
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Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\tabularnewline
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Baldock2011\_TB+Baldock2011\_JN\tabularnewline
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Dattilo2016\tabularnewline
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Devoto2005\_PP+Devoto2005\_AP\tabularnewline
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Devoto2005\_VT\tabularnewline
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Devoto2005\_LL+Devoto2005\_CT\tabularnewline
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Freitas2006\tabularnewline
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Gibson2006\_TA2\tabularnewline
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Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\tabularnewline
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MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\tabularnewline
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Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\tabularnewline
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Pinheiro2008\tabularnewline
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Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\tabularnewline
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Kato1993\tabularnewline
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KatoMiura1996\tabularnewline
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Kakutani1990\tabularnewline
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Inoue1990\tabularnewline
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Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\tabularnewline
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Souza\_cerrado\tabularnewline
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Souza\_chaco\tabularnewline
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Souza\_pantanal\tabularnewline
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Souza\_vereda\tabularnewline
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Adedoja2019\tabularnewline
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Oleques2019\tabularnewline
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Baldock2019\_Bristol\tabularnewline
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Baldock2019\_Edinburgh\tabularnewline
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Baldock2019\_Leeds\tabularnewline
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Baldock2019\_Reading\tabularnewline
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\bottomrule
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\end{longtable}
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Pour la collection 2
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\begin{figure}
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\centering
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\includegraphics{figure/iid_meso_plot-2.png}
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\caption{Collection 2 - iid}
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\end{figure}
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\begin{longtable}[]{@{}l@{}}
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
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dupont2003\tabularnewline
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herrera1988\tabularnewline
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inouye1988\tabularnewline
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medan2002ld\tabularnewline
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medan2002rb\tabularnewline
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ramirez1992\tabularnewline
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ramirez1989\tabularnewline
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Burkle2013\tabularnewline
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Olito-Fox2014\tabularnewline
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Benadi2013\_3(1340m)\tabularnewline
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Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\tabularnewline
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Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\tabularnewline
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Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\tabularnewline
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Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\tabularnewline
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Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\tabularnewline
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Devoto2005\_LQ\tabularnewline
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Devoto2005\_LT+Devoto2005\_LH\tabularnewline
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LemusJimenez2003\tabularnewline
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Lundgren2005\tabularnewline
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Marrero2013\tabularnewline
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Trojelsgaard2015\_La Gomera\tabularnewline
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Trojelsgaard2015\_Gran Canaria\tabularnewline
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Zackenberg\tabularnewline
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Yoshihara2008\tabularnewline
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Fragoso\_RA1+Fragoso\_RD2\tabularnewline
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PopicThesis\tabularnewline
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Pornon2017\tabularnewline
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Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\tabularnewline
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Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\tabularnewline
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Blumel2016\tabularnewline
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Kantsa2018\tabularnewline
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Bennett2018\tabularnewline
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Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\tabularnewline
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CordenizPicanco2018\_NatVeg\tabularnewline
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CordenizPicanco2018\_ExoFor\tabularnewline
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Benadi2018\tabularnewline
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Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\tabularnewline
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Jolls2019\tabularnewline
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Traveset2013\_Fernandina\tabularnewline
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Traveset2013\_Pinta\tabularnewline
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Traveset2013\_Santiago\tabularnewline
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Traveset2013\_SantaCruz\tabularnewline
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Traveset2013\_SanCristobal\tabularnewline
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Simanonok2014\tabularnewline
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Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\tabularnewline
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\bottomrule
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\end{longtable}
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Pour la collection 3
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\begin{figure}
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\centering
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\includegraphics{figure/iid_meso_plot-3.png}
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\caption{Collection 3 - iid}
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\end{figure}
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\begin{longtable}[]{@{}l@{}}
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
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small1976\tabularnewline
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\bottomrule
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\end{longtable}
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Pour la collection 4
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\begin{figure}
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\centering
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\includegraphics{figure/iid_meso_plot-4.png}
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\caption{Collection 4 - iid}
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\end{figure}
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\begin{longtable}[]{@{}l@{}}
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
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smith-ramirez2005\tabularnewline
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Weiner2011\tabularnewline
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Kaiser\_control+Kaiser\_restored\tabularnewline
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Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\tabularnewline
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Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\tabularnewline
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Fang2012\tabularnewline
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Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\tabularnewline
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Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\tabularnewline
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Dupont2009\_IsenBjerg+Dupont2009\_Other\tabularnewline
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Gibson2006\_GA1\tabularnewline
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Gibson2006\_TA1\tabularnewline
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LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\tabularnewline
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Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife
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Fasnia\tabularnewline
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Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\tabularnewline
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Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\tabularnewline
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Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\tabularnewline
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Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\tabularnewline
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Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\tabularnewline
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Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\tabularnewline
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Neli2014\tabularnewline
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\bottomrule
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\end{longtable}
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Pour la collection 5
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\begin{figure}
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\centering
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\includegraphics{figure/iid_meso_plot-5.png}
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\caption{Collection 5 - iid}
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\end{figure}
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\begin{longtable}[]{@{}l@{}}
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
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olensen2002aig\tabularnewline
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olensen2002flo\tabularnewline
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vazquez2002\tabularnewline
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Shay2016\tabularnewline
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Gibson2006\_GA2\tabularnewline
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Gibson2006\_SG\tabularnewline
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Trojelsgaard2015\_El Hierro\tabularnewline
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Trojelsgaard2015\_Fuerteventura\tabularnewline
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Trojelsgaard2015\_Western Sahara\tabularnewline
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Robinson2018\tabularnewline
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CordenizPicanco2018\_NatFor\tabularnewline
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CordenizPicanco2018\_SemiPast\tabularnewline
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CordenizPicanco2018\_IntPast\tabularnewline
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Biella2019\tabularnewline
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Nel2017\tabularnewline
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Villalobos2019\tabularnewline
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LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\tabularnewline
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Ferrero2013\tabularnewline
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Sritongchuay2019\_near+Sritongchuay2019\_far\tabularnewline
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\bottomrule
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\end{longtable}
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Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
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connectivité).
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Pour la collection 1 :
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\[\begin{bmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{bmatrix}\]
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Pour la collection 2 :
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\[\begin{bmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{bmatrix}\]
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Pour la collection 3 :
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\[\begin{bmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{bmatrix}\] Pour la
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collection 4 :
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\[\begin{bmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{bmatrix}\]
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Pour la collection 5 :
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\[\begin{bmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{bmatrix}\]
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\#\#\# Comparaison avec des infos supplémentaires
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\begin{figure}
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\centering
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\includegraphics{figure/Annual_timespan_plot-1.png}
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\caption{plot of chunk Annual\_timespan\_plot}
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\end{figure}
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\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie}{%
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\subsubsection{Répartition dans les clusters selon la
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taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie}}
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\includegraphics{figure/iid_plot_taxonomy_pollinators-1.png}\includegraphics{figure/iid_plot_taxonomy_pollinators-2.png}
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\includegraphics{figure/iid_plot_taxonomy_plants-1.png}\includegraphics{figure/iid_plot_taxonomy_plants-2.png}
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\hypertarget{tables}{%
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\paragraph{Tables}\label{tables}}
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\begin{verbatim}
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## # A tibble: 9 × 25
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## Taxon Collection_1_Bloc_1 Collection_1_Bloc_2 Collection_1_Bloc_3
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## <fct> <dbl> <dbl> <dbl>
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## 1 Hymenoptera 24 0 17
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## 2 Diptera 9 0 8
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## 3 n.i. 8 0 11
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## 4 Lepidoptera 7 0 6
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## 5 Coleoptera 0 0 0
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## 6 Other 0 0 0
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## 7 Birds NA NA NA
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## 8 Hemiptera NA NA NA
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## 9 Squamata NA NA NA
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## # ℹ 21 more variables: Collection_1_Bloc_4 <dbl>, Collection_1_Bloc_5 <dbl>,
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## # Collection_1_Bloc_6 <dbl>, Collection_1_Bloc_7 <dbl>,
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## # Collection_1_Bloc_8 <dbl>, Collection_2_Bloc_1 <dbl>,
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## # Collection_2_Bloc_2 <dbl>, Collection_2_Bloc_3 <dbl>,
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## # Collection_2_Bloc_4 <dbl>, Collection_3_Bloc_1 <dbl>,
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## # Collection_3_Bloc_2 <dbl>, Collection_4_Bloc_1 <dbl>,
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## # Collection_4_Bloc_2 <dbl>, Collection_4_Bloc_3 <dbl>, …
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\end{verbatim}
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\hypertarget{clustering-avec-le-moduxe8le-pi}{%
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\subsection{Clustering avec le modèle
|
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pi}\label{clustering-avec-le-moduxe8le-pi}}
|
||
|
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Avec le modèle \emph{pi} nous obtenons les 2 collections et les
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structures suivantes:
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|
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Pour la collection 1
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\begin{figure}
|
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\centering
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\includegraphics{figure/pi_meso_plot-1.png}
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\caption{Collection 1 - pi}
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\end{figure}
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|
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\begin{longtable}[]{@{}l@{}}
|
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\toprule
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Networks\tabularnewline
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\midrule
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\endhead
|
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arroyo1982\_1+arroyo1982\_2+arroyo3\tabularnewline
|
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eberling1999\tabularnewline
|
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inouye1988\tabularnewline
|
||
kato1990\tabularnewline
|
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ramirez1992\tabularnewline
|
||
petanidou1991\tabularnewline
|
||
ramirez1989\tabularnewline
|
||
smith-ramirez2005\tabularnewline
|
||
Junker2013\tabularnewline
|
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Kaiser\_control+Kaiser\_restored\tabularnewline
|
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bartomeus2008\tabularnewline
|
||
Olito-Fox2014\tabularnewline
|
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Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\tabularnewline
|
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Benadi2013\_3(1340m)\tabularnewline
|
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Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\tabularnewline
|
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Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\tabularnewline
|
||
Fang2012\tabularnewline
|
||
Shay2016\tabularnewline
|
||
Struck1994\tabularnewline
|
||
Kato2000\tabularnewline
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\tabularnewline
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\tabularnewline
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\tabularnewline
|
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Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\tabularnewline
|
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Baldock2011\_TB+Baldock2011\_JN\tabularnewline
|
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Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\tabularnewline
|
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Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\tabularnewline
|
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Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\tabularnewline
|
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Dattilo2016\tabularnewline
|
||
Devoto2005\_PP+Devoto2005\_AP\tabularnewline
|
||
Devoto2005\_VT\tabularnewline
|
||
Devoto2005\_LL+Devoto2005\_CT\tabularnewline
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\tabularnewline
|
||
Freitas2006\tabularnewline
|
||
Gibson2006\_TA1\tabularnewline
|
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Gibson2006\_TA2\tabularnewline
|
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Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\tabularnewline
|
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LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\tabularnewline
|
||
LemusJimenez2003\tabularnewline
|
||
Marrero2013\tabularnewline
|
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MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\tabularnewline
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\tabularnewline
|
||
Pinheiro2008\tabularnewline
|
||
Trojelsgaard2015\_La Gomera\tabularnewline
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife
|
||
Fasnia\tabularnewline
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\tabularnewline
|
||
Zackenberg\tabularnewline
|
||
Yoshihara2008\tabularnewline
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\tabularnewline
|
||
Kato1993\tabularnewline
|
||
KatoMiura1996\tabularnewline
|
||
Kakutani1990\tabularnewline
|
||
Inoue1990\tabularnewline
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\tabularnewline
|
||
PopicThesis\tabularnewline
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\tabularnewline
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\tabularnewline
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\tabularnewline
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\tabularnewline
|
||
Blumel2016\tabularnewline
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\tabularnewline
|
||
Souza\_cerrado\tabularnewline
|
||
Souza\_chaco\tabularnewline
|
||
Souza\_pantanal\tabularnewline
|
||
Souza\_vereda\tabularnewline
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\tabularnewline
|
||
Bennett2018\tabularnewline
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\tabularnewline
|
||
Adedoja2019\tabularnewline
|
||
CordenizPicanco2018\_NatVeg\tabularnewline
|
||
Benadi2018\tabularnewline
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\tabularnewline
|
||
Oleques2019\tabularnewline
|
||
Jolls2019\tabularnewline
|
||
Traveset2013\_Fernandina\tabularnewline
|
||
Traveset2013\_Santiago\tabularnewline
|
||
Traveset2013\_SantaCruz\tabularnewline
|
||
Traveset2013\_SanCristobal\tabularnewline
|
||
Simanonok2014\tabularnewline
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\tabularnewline
|
||
Baldock2019\_Bristol\tabularnewline
|
||
Baldock2019\_Edinburgh\tabularnewline
|
||
Baldock2019\_Leeds\tabularnewline
|
||
Baldock2019\_Reading\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 2
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pi_meso_plot-2.png}
|
||
\caption{Collection 2 - pi}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
dupont2003\tabularnewline
|
||
herrera1988\tabularnewline
|
||
medan2002ld\tabularnewline
|
||
medan2002rb\tabularnewline
|
||
olensen2002aig\tabularnewline
|
||
olensen2002flo\tabularnewline
|
||
small1976\tabularnewline
|
||
vazquez2002\tabularnewline
|
||
Burkle2013\tabularnewline
|
||
Weiner2011\tabularnewline
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\tabularnewline
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\tabularnewline
|
||
Devoto2005\_LQ\tabularnewline
|
||
Devoto2005\_LT+Devoto2005\_LH\tabularnewline
|
||
Gibson2006\_GA1\tabularnewline
|
||
Gibson2006\_GA2\tabularnewline
|
||
Gibson2006\_SG\tabularnewline
|
||
Lundgren2005\tabularnewline
|
||
Trojelsgaard2015\_El Hierro\tabularnewline
|
||
Trojelsgaard2015\_Gran Canaria\tabularnewline
|
||
Trojelsgaard2015\_Fuerteventura\tabularnewline
|
||
Trojelsgaard2015\_Western Sahara\tabularnewline
|
||
Fragoso\_RA1+Fragoso\_RD2\tabularnewline
|
||
Pornon2017\tabularnewline
|
||
Kantsa2018\tabularnewline
|
||
Robinson2018\tabularnewline
|
||
CordenizPicanco2018\_NatFor\tabularnewline
|
||
CordenizPicanco2018\_ExoFor\tabularnewline
|
||
CordenizPicanco2018\_SemiPast\tabularnewline
|
||
CordenizPicanco2018\_IntPast\tabularnewline
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\tabularnewline
|
||
Biella2019\tabularnewline
|
||
Nel2017\tabularnewline
|
||
Villalobos2019\tabularnewline
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\tabularnewline
|
||
Traveset2013\_Pinta\tabularnewline
|
||
Ferrero2013\tabularnewline
|
||
Neli2014\tabularnewline
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{bmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 2 :
|
||
\[\begin{bmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{bmatrix}\]
|
||
|
||
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}{%
|
||
\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}}
|
||
|
||
\includegraphics{figure/pi_plot_taxonomy_pollinators-1.png}\includegraphics{figure/pi_plot_taxonomy_pollinators-2.png}
|
||
|
||
\includegraphics{figure/pi_plot_taxonomy_plants-1.png}\includegraphics{figure/pi_plot_taxonomy_plants-2.png}
|
||
|
||
\hypertarget{clustering-avec-le-moduxe8le-rho}{%
|
||
\subsection{Clustering avec le modèle
|
||
rho}\label{clustering-avec-le-moduxe8le-rho}}
|
||
|
||
Avec le modèle \emph{rho} nous obtenons les 1 collections et les
|
||
structures suivantes:
|
||
|
||
Pour la collection 1
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/rho_meso_plot-1.png}
|
||
\caption{Collection 1 - rho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
arroyo1982\_1+arroyo1982\_2+arroyo3\tabularnewline
|
||
dupont2003\tabularnewline
|
||
eberling1999\tabularnewline
|
||
herrera1988\tabularnewline
|
||
inouye1988\tabularnewline
|
||
kato1990\tabularnewline
|
||
medan2002ld\tabularnewline
|
||
medan2002rb\tabularnewline
|
||
olensen2002aig\tabularnewline
|
||
olensen2002flo\tabularnewline
|
||
ramirez1992\tabularnewline
|
||
small1976\tabularnewline
|
||
vazquez2002\tabularnewline
|
||
petanidou1991\tabularnewline
|
||
ramirez1989\tabularnewline
|
||
smith-ramirez2005\tabularnewline
|
||
Burkle2013\tabularnewline
|
||
Junker2013\tabularnewline
|
||
Weiner2011\tabularnewline
|
||
Kaiser\_control+Kaiser\_restored\tabularnewline
|
||
bartomeus2008\tabularnewline
|
||
Olito-Fox2014\tabularnewline
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\tabularnewline
|
||
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\tabularnewline
|
||
Benadi2013\_3(1340m)\tabularnewline
|
||
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\tabularnewline
|
||
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\tabularnewline
|
||
Fang2012\tabularnewline
|
||
Shay2016\tabularnewline
|
||
Struck1994\tabularnewline
|
||
Kato2000\tabularnewline
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\tabularnewline
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\tabularnewline
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\tabularnewline
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\tabularnewline
|
||
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\tabularnewline
|
||
Baldock2011\_TB+Baldock2011\_JN\tabularnewline
|
||
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\tabularnewline
|
||
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\tabularnewline
|
||
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\tabularnewline
|
||
Dattilo2016\tabularnewline
|
||
Devoto2005\_LQ\tabularnewline
|
||
Devoto2005\_PP+Devoto2005\_AP\tabularnewline
|
||
Devoto2005\_LT+Devoto2005\_LH\tabularnewline
|
||
Devoto2005\_VT\tabularnewline
|
||
Devoto2005\_LL+Devoto2005\_CT\tabularnewline
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\tabularnewline
|
||
Freitas2006\tabularnewline
|
||
Gibson2006\_GA1\tabularnewline
|
||
Gibson2006\_GA2\tabularnewline
|
||
Gibson2006\_SG\tabularnewline
|
||
Gibson2006\_TA1\tabularnewline
|
||
Gibson2006\_TA2\tabularnewline
|
||
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\tabularnewline
|
||
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\tabularnewline
|
||
LemusJimenez2003\tabularnewline
|
||
Lundgren2005\tabularnewline
|
||
Marrero2013\tabularnewline
|
||
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\tabularnewline
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\tabularnewline
|
||
Pinheiro2008\tabularnewline
|
||
Trojelsgaard2015\_El Hierro\tabularnewline
|
||
Trojelsgaard2015\_La Gomera\tabularnewline
|
||
Trojelsgaard2015\_Gran Canaria\tabularnewline
|
||
Trojelsgaard2015\_Fuerteventura\tabularnewline
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife
|
||
Fasnia\tabularnewline
|
||
Trojelsgaard2015\_Western Sahara\tabularnewline
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\tabularnewline
|
||
Zackenberg\tabularnewline
|
||
Yoshihara2008\tabularnewline
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\tabularnewline
|
||
Kato1993\tabularnewline
|
||
KatoMiura1996\tabularnewline
|
||
Kakutani1990\tabularnewline
|
||
Inoue1990\tabularnewline
|
||
Fragoso\_RA1+Fragoso\_RD2\tabularnewline
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\tabularnewline
|
||
PopicThesis\tabularnewline
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\tabularnewline
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\tabularnewline
|
||
Pornon2017\tabularnewline
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\tabularnewline
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\tabularnewline
|
||
Blumel2016\tabularnewline
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\tabularnewline
|
||
Kantsa2018\tabularnewline
|
||
Souza\_cerrado\tabularnewline
|
||
Souza\_chaco\tabularnewline
|
||
Souza\_pantanal\tabularnewline
|
||
Souza\_vereda\tabularnewline
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\tabularnewline
|
||
Robinson2018\tabularnewline
|
||
Bennett2018\tabularnewline
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\tabularnewline
|
||
Adedoja2019\tabularnewline
|
||
CordenizPicanco2018\_NatFor\tabularnewline
|
||
CordenizPicanco2018\_NatVeg\tabularnewline
|
||
CordenizPicanco2018\_ExoFor\tabularnewline
|
||
CordenizPicanco2018\_SemiPast\tabularnewline
|
||
CordenizPicanco2018\_IntPast\tabularnewline
|
||
Benadi2018\tabularnewline
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\tabularnewline
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\tabularnewline
|
||
Oleques2019\tabularnewline
|
||
Biella2019\tabularnewline
|
||
Jolls2019\tabularnewline
|
||
Nel2017\tabularnewline
|
||
Villalobos2019\tabularnewline
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\tabularnewline
|
||
Traveset2013\_Fernandina\tabularnewline
|
||
Traveset2013\_Pinta\tabularnewline
|
||
Traveset2013\_Santiago\tabularnewline
|
||
Traveset2013\_SantaCruz\tabularnewline
|
||
Traveset2013\_SanCristobal\tabularnewline
|
||
Ferrero2013\tabularnewline
|
||
Simanonok2014\tabularnewline
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\tabularnewline
|
||
Neli2014\tabularnewline
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\tabularnewline
|
||
Baldock2019\_Bristol\tabularnewline
|
||
Baldock2019\_Edinburgh\tabularnewline
|
||
Baldock2019\_Leeds\tabularnewline
|
||
Baldock2019\_Reading\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{bmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{bmatrix}\]
|
||
|
||
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}{%
|
||
\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}}
|
||
|
||
\includegraphics{figure/rho_plot_taxonomy_pollinators-1.png}\includegraphics{figure/rho_plot_taxonomy_pollinators-2.png}
|
||
|
||
\includegraphics{figure/rho_plot_taxonomy_plants-1.png}\includegraphics{figure/rho_plot_taxonomy_plants-2.png}
|
||
|
||
\hypertarget{clustering-avec-le-moduxe8le-pirho}{%
|
||
\subsection{Clustering avec le modèle
|
||
pirho}\label{clustering-avec-le-moduxe8le-pirho}}
|
||
|
||
Avec le modèle \emph{pirho} nous obtenons les 15 collections et les
|
||
structures suivantes:
|
||
|
||
Pour la collection 1
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-1.png}
|
||
\caption{Collection 1 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
arroyo1982\_1+arroyo1982\_2+arroyo3\tabularnewline
|
||
dupont2003\tabularnewline
|
||
petanidou1991\tabularnewline
|
||
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\tabularnewline
|
||
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\tabularnewline
|
||
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\tabularnewline
|
||
Pinheiro2008\tabularnewline
|
||
Souza\_pantanal\tabularnewline
|
||
Robinson2018\tabularnewline
|
||
Jolls2019\tabularnewline
|
||
Traveset2013\_Fernandina\tabularnewline
|
||
Baldock2019\_Leeds\tabularnewline
|
||
Baldock2019\_Reading\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 2
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-2.png}
|
||
\caption{Collection 2 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Benadi2013\_3(1340m)\tabularnewline
|
||
Trojelsgaard2015\_La Gomera\tabularnewline
|
||
CordenizPicanco2018\_SemiPast\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 3
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-3.png}
|
||
\caption{Collection 3 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Kato2000\tabularnewline
|
||
Freitas2006\tabularnewline
|
||
Inoue1990\tabularnewline
|
||
Souza\_cerrado\tabularnewline
|
||
Adedoja2019\tabularnewline
|
||
Baldock2019\_Bristol\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 4
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-4.png}
|
||
\caption{Collection 4 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\tabularnewline
|
||
LemusJimenez2003\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 5
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-5.png}
|
||
\caption{Collection 5 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
inouye1988\tabularnewline
|
||
Junker2013\tabularnewline
|
||
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\tabularnewline
|
||
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\tabularnewline
|
||
Kakutani1990\tabularnewline
|
||
Fragoso\_RA1+Fragoso\_RD2\tabularnewline
|
||
Souza\_chaco\tabularnewline
|
||
Oleques2019\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 6
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-6.png}
|
||
\caption{Collection 6 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
medan2002ld\tabularnewline
|
||
small1976\tabularnewline
|
||
smith-ramirez2005\tabularnewline
|
||
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\tabularnewline
|
||
Shay2016\tabularnewline
|
||
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\tabularnewline
|
||
Lundgren2005\tabularnewline
|
||
Zackenberg\tabularnewline
|
||
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\tabularnewline
|
||
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\tabularnewline
|
||
Bennett2018\tabularnewline
|
||
CordenizPicanco2018\_NatFor\tabularnewline
|
||
CordenizPicanco2018\_ExoFor\tabularnewline
|
||
CordenizPicanco2018\_IntPast\tabularnewline
|
||
Benadi2018\tabularnewline
|
||
Villalobos2019\tabularnewline
|
||
Traveset2013\_Santiago\tabularnewline
|
||
Traveset2013\_SantaCruz\tabularnewline
|
||
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\tabularnewline
|
||
Sritongchuay2019\_near+Sritongchuay2019\_far\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 7
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-7.png}
|
||
\caption{Collection 7 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
medan2002rb\tabularnewline
|
||
olensen2002flo\tabularnewline
|
||
vazquez2002\tabularnewline
|
||
Trojelsgaard2015\_Gran Canaria\tabularnewline
|
||
Trojelsgaard2015\_Western Sahara\tabularnewline
|
||
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 8
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-8.png}
|
||
\caption{Collection 8 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Weiner2011\tabularnewline
|
||
Kaiser\_control+Kaiser\_restored\tabularnewline
|
||
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\tabularnewline
|
||
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\tabularnewline
|
||
Fang2012\tabularnewline
|
||
Gibson2006\_SG\tabularnewline
|
||
Gibson2006\_TA1\tabularnewline
|
||
Trojelsgaard2015\_Fuerteventura\tabularnewline
|
||
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\tabularnewline
|
||
Biella2019\tabularnewline
|
||
Nel2017\tabularnewline
|
||
Ferrero2013\tabularnewline
|
||
Neli2014\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 9
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-9.png}
|
||
\caption{Collection 9 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
eberling1999\tabularnewline
|
||
ramirez1992\tabularnewline
|
||
Struck1994\tabularnewline
|
||
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\tabularnewline
|
||
Devoto2005\_PP+Devoto2005\_AP\tabularnewline
|
||
Devoto2005\_VT\tabularnewline
|
||
Gibson2006\_TA2\tabularnewline
|
||
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\tabularnewline
|
||
Yoshihara2008\tabularnewline
|
||
PopicThesis\tabularnewline
|
||
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\tabularnewline
|
||
Souza\_vereda\tabularnewline
|
||
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\tabularnewline
|
||
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 10
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-10.png}
|
||
\caption{Collection 10 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
herrera1988\tabularnewline
|
||
Burkle2013\tabularnewline
|
||
bartomeus2008\tabularnewline
|
||
Olito-Fox2014\tabularnewline
|
||
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\tabularnewline
|
||
Baldock2011\_TB+Baldock2011\_JN\tabularnewline
|
||
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\tabularnewline
|
||
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\tabularnewline
|
||
Devoto2005\_LQ\tabularnewline
|
||
Devoto2005\_LT+Devoto2005\_LH\tabularnewline
|
||
Devoto2005\_LL+Devoto2005\_CT\tabularnewline
|
||
Dupont2009\_IsenBjerg+Dupont2009\_Other\tabularnewline
|
||
Gibson2006\_GA1\tabularnewline
|
||
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\tabularnewline
|
||
Marrero2013\tabularnewline
|
||
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife
|
||
Fasnia\tabularnewline
|
||
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\tabularnewline
|
||
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\tabularnewline
|
||
Pornon2017\tabularnewline
|
||
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\tabularnewline
|
||
Blumel2016\tabularnewline
|
||
Kantsa2018\tabularnewline
|
||
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\tabularnewline
|
||
CordenizPicanco2018\_NatVeg\tabularnewline
|
||
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\tabularnewline
|
||
Traveset2013\_Pinta\tabularnewline
|
||
Traveset2013\_SanCristobal\tabularnewline
|
||
Simanonok2014\tabularnewline
|
||
Baldock2019\_Edinburgh\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 11
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-11.png}
|
||
\caption{Collection 11 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
kato1990\tabularnewline
|
||
ramirez1989\tabularnewline
|
||
Kato1993\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 12
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-12.png}
|
||
\caption{Collection 12 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\tabularnewline
|
||
Dattilo2016\tabularnewline
|
||
KatoMiura1996\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 13
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-13.png}
|
||
\caption{Collection 13 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
olensen2002aig\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 14
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-14.png}
|
||
\caption{Collection 14 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Trojelsgaard2015\_El Hierro\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Pour la collection 15
|
||
|
||
\begin{figure}
|
||
\centering
|
||
\includegraphics{figure/pirho_meso_plot-15.png}
|
||
\caption{Collection 15 - pirho}
|
||
\end{figure}
|
||
|
||
\begin{longtable}[]{@{}l@{}}
|
||
\toprule
|
||
Networks\tabularnewline
|
||
\midrule
|
||
\endhead
|
||
Gibson2006\_GA2\tabularnewline
|
||
\bottomrule
|
||
\end{longtable}
|
||
|
||
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
||
connectivité).
|
||
|
||
Pour la collection 1 :
|
||
\[\begin{bmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{bmatrix}\]
|
||
Pour la collection 2 :
|
||
\[\begin{bmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{bmatrix}\] Pour la
|
||
collection 3 :
|
||
\[\begin{bmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 4 :
|
||
\[\begin{bmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{bmatrix}\]
|
||
Pour la collection 5 :
|
||
\[\begin{bmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 6 :
|
||
\[\begin{bmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 7 :
|
||
\[\begin{bmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{bmatrix}\]
|
||
Pour la collection 8 :
|
||
\[\begin{bmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 9 :
|
||
\[\begin{bmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{bmatrix}\]
|
||
Pour la collection 10 :
|
||
\[\begin{bmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{bmatrix}\]
|
||
Pour la collection 11 :
|
||
\[\begin{bmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{bmatrix}\]
|
||
Pour la collection 12 :
|
||
\[\begin{bmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{bmatrix}\]
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Pour la collection 13 : \[\begin{bmatrix} 0.78 \\0.19 \\ \end{bmatrix}\]
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Pour la collection 14 : \[\begin{bmatrix} 0.44 &0.08 \\ \end{bmatrix}\]
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Pour la collection 15 :
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||
\[\begin{bmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{bmatrix}\]
|
||
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\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}{%
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\subsubsection{Répartition dans les clusters selon la
|
||
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}}
|
||
|
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\includegraphics{figure/pirho_plot_taxonomy_pollinators-1.png}\includegraphics{figure/pirho_plot_taxonomy_pollinators-2.png}
|
||
|
||
\includegraphics{figure/pirho_plot_taxonomy_plants-1.png}\includegraphics{figure/pirho_plot_taxonomy_plants-2.png}
|