1503 lines
40 KiB
TeX
1503 lines
40 KiB
TeX
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pdftitle={Présentation de l'application de colSBM sur Doré et al.~2020},
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\title{Présentation de l'application de colSBM sur Doré et al.~2020}
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\author{}
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\date{\vspace{-2.5em}}
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\begin{document}
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\maketitle
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\hypertarget{clustering-avec-le-moduxe8le-iid}{%
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\subsection{Clustering avec le modèle
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iid}\label{clustering-avec-le-moduxe8le-iid}}
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Avec le modèle \emph{iid} nous obtenons les 5 collections et les
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structures suivantes:
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Pour la collection 1
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\begin{figure}
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\centering
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\includegraphics{presentation_dore_files/figure-latex/iid_meso_plot-1.pdf}
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\caption{Collection 1 - iid}
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\end{figure}
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\begin{tabular}{l}
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\hline
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Networks\\
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\hline
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arroyo1982\_1+arroyo1982\_2+arroyo3\\
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\hline
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eberling1999\\
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\hline
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kato1990\\
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\hline
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petanidou1991\\
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\hline
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Junker2013\\
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\hline
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bartomeus2008\\
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\hline
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Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
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\hline
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Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
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\hline
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Struck1994\\
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\hline
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Kato2000\\
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\hline
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Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
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\hline
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Baldock2011\_TB+Baldock2011\_JN\\
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\hline
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Dattilo2016\\
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\hline
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Devoto2005\_PP+Devoto2005\_AP\\
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\hline
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Devoto2005\_VT\\
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\hline
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Devoto2005\_LL+Devoto2005\_CT\\
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\hline
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Freitas2006\\
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\hline
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Gibson2006\_TA2\\
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\hline
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Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
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\hline
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MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
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\hline
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Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
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\hline
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Pinheiro2008\\
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\hline
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Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
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\hline
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Kato1993\\
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\hline
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KatoMiura1996\\
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\hline
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Kakutani1990\\
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\hline
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Inoue1990\\
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\hline
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Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
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\hline
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Souza\_cerrado\\
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\hline
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Souza\_chaco\\
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\hline
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Souza\_pantanal\\
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\hline
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Souza\_vereda\\
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\hline
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Adedoja2019\\
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\hline
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Oleques2019\\
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\hline
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Baldock2019\_Bristol\\
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\hline
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Baldock2019\_Edinburgh\\
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\hline
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Baldock2019\_Leeds\\
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\hline
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Baldock2019\_Reading\\
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\hline
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\end{tabular}
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Pour la collection 2
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\begin{figure}
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\centering
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\includegraphics{presentation_dore_files/figure-latex/iid_meso_plot-2.pdf}
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\caption{Collection 2 - iid}
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\end{figure}
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\begin{tabular}{l}
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\hline
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Networks\\
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|
\hline
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|
dupont2003\\
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\hline
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herrera1988\\
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\hline
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inouye1988\\
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\hline
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medan2002ld\\
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\hline
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medan2002rb\\
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\hline
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ramirez1992\\
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\hline
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ramirez1989\\
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\hline
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Burkle2013\\
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\hline
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Olito-Fox2014\\
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\hline
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Benadi2013\_3(1340m)\\
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\hline
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Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
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\hline
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Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
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\hline
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Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
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\hline
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Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
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\hline
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Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
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\hline
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Devoto2005\_LQ\\
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\hline
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Devoto2005\_LT+Devoto2005\_LH\\
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\hline
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LemusJimenez2003\\
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\hline
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Lundgren2005\\
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\hline
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Marrero2013\\
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\hline
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Trojelsgaard2015\_La Gomera\\
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\hline
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Trojelsgaard2015\_Gran Canaria\\
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\hline
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Zackenberg\\
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\hline
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Yoshihara2008\\
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\hline
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Fragoso\_RA1+Fragoso\_RD2\\
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\hline
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PopicThesis\\
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\hline
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Pornon2017\\
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\hline
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Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
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\hline
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Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
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\hline
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Blumel2016\\
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\hline
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Kantsa2018\\
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\hline
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Bennett2018\\
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\hline
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Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
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\hline
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CordenizPicanco2018\_NatVeg\\
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\hline
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CordenizPicanco2018\_ExoFor\\
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\hline
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Benadi2018\\
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\hline
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Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
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\hline
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Jolls2019\\
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\hline
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Traveset2013\_Fernandina\\
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\hline
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Traveset2013\_Pinta\\
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\hline
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Traveset2013\_Santiago\\
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\hline
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Traveset2013\_SantaCruz\\
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\hline
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Traveset2013\_SanCristobal\\
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\hline
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Simanonok2014\\
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\hline
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Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
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\hline
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\end{tabular}
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Pour la collection 3
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\begin{figure}
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\centering
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\includegraphics{presentation_dore_files/figure-latex/iid_meso_plot-3.pdf}
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\caption{Collection 3 - iid}
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\end{figure}
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\begin{tabular}{l}
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\hline
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Networks\\
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\hline
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small1976\\
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\hline
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\end{tabular}
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Pour la collection 4
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|
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\begin{figure}
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\centering
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\includegraphics{presentation_dore_files/figure-latex/iid_meso_plot-4.pdf}
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\caption{Collection 4 - iid}
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\end{figure}
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\begin{tabular}{l}
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\hline
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Networks\\
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\hline
|
|
smith-ramirez2005\\
|
|
\hline
|
|
Weiner2011\\
|
|
\hline
|
|
Kaiser\_control+Kaiser\_restored\\
|
|
\hline
|
|
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
|
\hline
|
|
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
|
\hline
|
|
Fang2012\\
|
|
\hline
|
|
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
|
\hline
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|
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
|
\hline
|
|
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
|
\hline
|
|
Gibson2006\_GA1\\
|
|
\hline
|
|
Gibson2006\_TA1\\
|
|
\hline
|
|
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
|
\hline
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|
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
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|
\hline
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|
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
|
\hline
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|
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
|
\hline
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|
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
|
\hline
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|
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
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|
\hline
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|
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
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\hline
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Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
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\hline
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Neli2014\\
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\hline
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\end{tabular}
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Pour la collection 5
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\begin{figure}
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\centering
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\includegraphics{presentation_dore_files/figure-latex/iid_meso_plot-5.pdf}
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\caption{Collection 5 - iid}
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\end{figure}
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\begin{tabular}{l}
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\hline
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Networks\\
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\hline
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|
olensen2002aig\\
|
|
\hline
|
|
olensen2002flo\\
|
|
\hline
|
|
vazquez2002\\
|
|
\hline
|
|
Shay2016\\
|
|
\hline
|
|
Gibson2006\_GA2\\
|
|
\hline
|
|
Gibson2006\_SG\\
|
|
\hline
|
|
Trojelsgaard2015\_El Hierro\\
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|
\hline
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|
Trojelsgaard2015\_Fuerteventura\\
|
|
\hline
|
|
Trojelsgaard2015\_Western Sahara\\
|
|
\hline
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|
Robinson2018\\
|
|
\hline
|
|
CordenizPicanco2018\_NatFor\\
|
|
\hline
|
|
CordenizPicanco2018\_SemiPast\\
|
|
\hline
|
|
CordenizPicanco2018\_IntPast\\
|
|
\hline
|
|
Biella2019\\
|
|
\hline
|
|
Nel2017\\
|
|
\hline
|
|
Villalobos2019\\
|
|
\hline
|
|
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
|
\hline
|
|
Ferrero2013\\
|
|
\hline
|
|
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
|
\hline
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|
\end{tabular}
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Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
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connectivité).
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Pour la collection 1 :
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\[\begin{bmatrix} 1 &0.83 &0.43 &0.73 &0.2 &0.5 &0.05 &0.18 \\1 &0.67 &0.36 &0.51 &0.22 &0.3 &0.05 &0.07 \\1 &0.53 &1 &0.01 &0.02 &0.89 &0 &0 \\0.97 &0.45 &0.62 &0.18 &0.47 &0.06 &0.2 &0.03 \\0.76 &0.46 &0.1 &0.27 &0.1 &0.14 &0.02 &0.03 \\0.96 &0.2 &0.37 &0.03 &0.24 &0.01 &0.09 &0.01 \\0.54 &0.28 &0.04 &0.12 &0.03 &0.05 &0.01 &0.01 \\0.69 &0.1 &0.3 &0.02 &0.06 &0.01 &0.03 &0 \\ \end{bmatrix}\]
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Pour la collection 2 :
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\[\begin{bmatrix} 0.84 &0.69 &0.13 &0.32 \\0.71 &0.49 &0.11 &0.14 \\0.54 &0.26 &0.14 &0.05 \\0.26 &0.07 &0.14 &0.01 \\ \end{bmatrix}\]
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Pour la collection 3 :
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\[\begin{bmatrix} 0.87 &0.33 \\0.11 &0.09 \\ \end{bmatrix}\] Pour la
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collection 4 :
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\[\begin{bmatrix} 0.96 &0.83 &0.96 &0.39 &0.8 &0.16 &0.66 \\0.98 &0.86 &0.83 &0.51 &0.56 &0.19 &0.09 \\0.8 &0.46 &0.74 &0.12 &0.4 &0.05 &0.13 \\0.89 &0.69 &0.44 &0.35 &0.15 &0.07 &0.01 \\0.7 &0.29 &0.35 &0.03 &0.15 &0.01 &0.03 \\0.66 &0.43 &0.1 &0.17 &0.03 &0.02 &0 \\0.32 &0.12 &0.02 &0.04 &0 &0 &0 \\ \end{bmatrix}\]
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Pour la collection 5 :
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\[\begin{bmatrix} 0.71 &0.9 &0.57 &0.83 \\0.74 &0.22 &0.7 &0.33 \\0.09 &0.44 &0.07 &0.02 \\ \end{bmatrix}\]
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\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie}{%
|
|
\subsubsection{Répartition dans les clusters selon la
|
|
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie}}
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|
|
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\includegraphics{presentation_dore_files/figure-latex/iid_plot_taxonomy_pollinators-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/iid_plot_taxonomy_pollinators-2.pdf}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/iid_plot_taxonomy_plants-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/iid_plot_taxonomy_plants-2.pdf}
|
|
|
|
\hypertarget{clustering-avec-le-moduxe8le-pi}{%
|
|
\subsection{Clustering avec le modèle
|
|
pi}\label{clustering-avec-le-moduxe8le-pi}}
|
|
|
|
Avec le modèle \emph{pi} nous obtenons les 2 collections et les
|
|
structures suivantes:
|
|
|
|
Pour la collection 1
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_meso_plot-1.pdf}
|
|
\caption{Collection 1 - pi}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
|
\hline
|
|
eberling1999\\
|
|
\hline
|
|
inouye1988\\
|
|
\hline
|
|
kato1990\\
|
|
\hline
|
|
ramirez1992\\
|
|
\hline
|
|
petanidou1991\\
|
|
\hline
|
|
ramirez1989\\
|
|
\hline
|
|
smith-ramirez2005\\
|
|
\hline
|
|
Junker2013\\
|
|
\hline
|
|
Kaiser\_control+Kaiser\_restored\\
|
|
\hline
|
|
bartomeus2008\\
|
|
\hline
|
|
Olito-Fox2014\\
|
|
\hline
|
|
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
|
\hline
|
|
Benadi2013\_3(1340m)\\
|
|
\hline
|
|
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
|
\hline
|
|
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
|
\hline
|
|
Fang2012\\
|
|
\hline
|
|
Shay2016\\
|
|
\hline
|
|
Struck1994\\
|
|
\hline
|
|
Kato2000\\
|
|
\hline
|
|
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
|
\hline
|
|
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
|
\hline
|
|
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
|
\hline
|
|
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
|
\hline
|
|
Baldock2011\_TB+Baldock2011\_JN\\
|
|
\hline
|
|
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
|
\hline
|
|
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
|
\hline
|
|
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
|
\hline
|
|
Dattilo2016\\
|
|
\hline
|
|
Devoto2005\_PP+Devoto2005\_AP\\
|
|
\hline
|
|
Devoto2005\_VT\\
|
|
\hline
|
|
Devoto2005\_LL+Devoto2005\_CT\\
|
|
\hline
|
|
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
|
\hline
|
|
Freitas2006\\
|
|
\hline
|
|
Gibson2006\_TA1\\
|
|
\hline
|
|
Gibson2006\_TA2\\
|
|
\hline
|
|
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
|
\hline
|
|
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
|
\hline
|
|
LemusJimenez2003\\
|
|
\hline
|
|
Marrero2013\\
|
|
\hline
|
|
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
|
\hline
|
|
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
|
\hline
|
|
Pinheiro2008\\
|
|
\hline
|
|
Trojelsgaard2015\_La Gomera\\
|
|
\hline
|
|
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
|
\hline
|
|
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
|
\hline
|
|
Zackenberg\\
|
|
\hline
|
|
Yoshihara2008\\
|
|
\hline
|
|
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
|
\hline
|
|
Kato1993\\
|
|
\hline
|
|
KatoMiura1996\\
|
|
\hline
|
|
Kakutani1990\\
|
|
\hline
|
|
Inoue1990\\
|
|
\hline
|
|
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
|
\hline
|
|
PopicThesis\\
|
|
\hline
|
|
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
|
\hline
|
|
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
|
\hline
|
|
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
|
\hline
|
|
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
|
\hline
|
|
Blumel2016\\
|
|
\hline
|
|
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
|
\hline
|
|
Souza\_cerrado\\
|
|
\hline
|
|
Souza\_chaco\\
|
|
\hline
|
|
Souza\_pantanal\\
|
|
\hline
|
|
Souza\_vereda\\
|
|
\hline
|
|
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
|
\hline
|
|
Bennett2018\\
|
|
\hline
|
|
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
|
\hline
|
|
Adedoja2019\\
|
|
\hline
|
|
CordenizPicanco2018\_NatVeg\\
|
|
\hline
|
|
Benadi2018\\
|
|
\hline
|
|
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
|
\hline
|
|
Oleques2019\\
|
|
\hline
|
|
Jolls2019\\
|
|
\hline
|
|
Traveset2013\_Fernandina\\
|
|
\hline
|
|
Traveset2013\_Santiago\\
|
|
\hline
|
|
Traveset2013\_SantaCruz\\
|
|
\hline
|
|
Traveset2013\_SanCristobal\\
|
|
\hline
|
|
Simanonok2014\\
|
|
\hline
|
|
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
|
\hline
|
|
Baldock2019\_Bristol\\
|
|
\hline
|
|
Baldock2019\_Edinburgh\\
|
|
\hline
|
|
Baldock2019\_Leeds\\
|
|
\hline
|
|
Baldock2019\_Reading\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 2
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_meso_plot-2.pdf}
|
|
\caption{Collection 2 - pi}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
dupont2003\\
|
|
\hline
|
|
herrera1988\\
|
|
\hline
|
|
medan2002ld\\
|
|
\hline
|
|
medan2002rb\\
|
|
\hline
|
|
olensen2002aig\\
|
|
\hline
|
|
olensen2002flo\\
|
|
\hline
|
|
small1976\\
|
|
\hline
|
|
vazquez2002\\
|
|
\hline
|
|
Burkle2013\\
|
|
\hline
|
|
Weiner2011\\
|
|
\hline
|
|
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
|
\hline
|
|
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
|
\hline
|
|
Devoto2005\_LQ\\
|
|
\hline
|
|
Devoto2005\_LT+Devoto2005\_LH\\
|
|
\hline
|
|
Gibson2006\_GA1\\
|
|
\hline
|
|
Gibson2006\_GA2\\
|
|
\hline
|
|
Gibson2006\_SG\\
|
|
\hline
|
|
Lundgren2005\\
|
|
\hline
|
|
Trojelsgaard2015\_El Hierro\\
|
|
\hline
|
|
Trojelsgaard2015\_Gran Canaria\\
|
|
\hline
|
|
Trojelsgaard2015\_Fuerteventura\\
|
|
\hline
|
|
Trojelsgaard2015\_Western Sahara\\
|
|
\hline
|
|
Fragoso\_RA1+Fragoso\_RD2\\
|
|
\hline
|
|
Pornon2017\\
|
|
\hline
|
|
Kantsa2018\\
|
|
\hline
|
|
Robinson2018\\
|
|
\hline
|
|
CordenizPicanco2018\_NatFor\\
|
|
\hline
|
|
CordenizPicanco2018\_ExoFor\\
|
|
\hline
|
|
CordenizPicanco2018\_SemiPast\\
|
|
\hline
|
|
CordenizPicanco2018\_IntPast\\
|
|
\hline
|
|
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
|
\hline
|
|
Biella2019\\
|
|
\hline
|
|
Nel2017\\
|
|
\hline
|
|
Villalobos2019\\
|
|
\hline
|
|
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
|
\hline
|
|
Traveset2013\_Pinta\\
|
|
\hline
|
|
Ferrero2013\\
|
|
\hline
|
|
Neli2014\\
|
|
\hline
|
|
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
|
connectivité).
|
|
|
|
Pour la collection 1 :
|
|
\[\begin{bmatrix} 1 &0.9 &0.92 &0.55 &0.75 &0.57 &0.17 \\0.1 &0.21 &0.81 &0.86 &0.7 &0.4 &0.54 \\0.38 &0.12 &0.03 &0.09 &0.92 &0.65 &0.17 \\0.76 &0.5 &0.1 &0.33 &0.17 &0.04 &0.65 \\0.71 &0.5 &0.18 &0.28 &0.19 &0.04 &0.01 \\0.03 &0.89 &0.4 &0.05 &0.53 &0.2 &0.03 \\0.22 &0.07 &0.01 &0.22 &0.35 &0.21 &0.06 \\0.11 &0.07 &0.01 &0.01 &0.01 &0.6 &0.15 \\0.02 &0.21 &0.06 &0.01 &0.06 &0.01 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 2 :
|
|
\[\begin{bmatrix} 0.84 &0.99 &0.66 &0.99 &0.38 &0.79 \\0.79 &0.5 &0.01 &0.19 &0.46 &0.51 \\0.15 &0.02 &0.08 &0.83 &0.22 &0.44 \\0 &0.05 &0.49 &0.07 &0.15 &0 \\0.01 &0.16 &0 &0.04 &0 &0 \\ \end{bmatrix}\]
|
|
|
|
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}{%
|
|
\subsubsection{Répartition dans les clusters selon la
|
|
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-1}}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_plot_taxonomy_pollinators-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_plot_taxonomy_pollinators-2.pdf}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_plot_taxonomy_plants-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/pi_plot_taxonomy_plants-2.pdf}
|
|
|
|
\hypertarget{clustering-avec-le-moduxe8le-rho}{%
|
|
\subsection{Clustering avec le modèle
|
|
rho}\label{clustering-avec-le-moduxe8le-rho}}
|
|
|
|
Avec le modèle \emph{rho} nous obtenons les 1 collections et les
|
|
structures suivantes:
|
|
|
|
Pour la collection 1
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/rho_meso_plot-1.pdf}
|
|
\caption{Collection 1 - rho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
|
\hline
|
|
dupont2003\\
|
|
\hline
|
|
eberling1999\\
|
|
\hline
|
|
herrera1988\\
|
|
\hline
|
|
inouye1988\\
|
|
\hline
|
|
kato1990\\
|
|
\hline
|
|
medan2002ld\\
|
|
\hline
|
|
medan2002rb\\
|
|
\hline
|
|
olensen2002aig\\
|
|
\hline
|
|
olensen2002flo\\
|
|
\hline
|
|
ramirez1992\\
|
|
\hline
|
|
small1976\\
|
|
\hline
|
|
vazquez2002\\
|
|
\hline
|
|
petanidou1991\\
|
|
\hline
|
|
ramirez1989\\
|
|
\hline
|
|
smith-ramirez2005\\
|
|
\hline
|
|
Burkle2013\\
|
|
\hline
|
|
Junker2013\\
|
|
\hline
|
|
Weiner2011\\
|
|
\hline
|
|
Kaiser\_control+Kaiser\_restored\\
|
|
\hline
|
|
bartomeus2008\\
|
|
\hline
|
|
Olito-Fox2014\\
|
|
\hline
|
|
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
|
\hline
|
|
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
|
\hline
|
|
Benadi2013\_3(1340m)\\
|
|
\hline
|
|
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
|
\hline
|
|
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
|
\hline
|
|
Fang2012\\
|
|
\hline
|
|
Shay2016\\
|
|
\hline
|
|
Struck1994\\
|
|
\hline
|
|
Kato2000\\
|
|
\hline
|
|
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
|
\hline
|
|
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
|
\hline
|
|
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
|
\hline
|
|
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
|
\hline
|
|
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
|
\hline
|
|
Baldock2011\_TB+Baldock2011\_JN\\
|
|
\hline
|
|
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
|
\hline
|
|
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
|
\hline
|
|
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
|
\hline
|
|
Dattilo2016\\
|
|
\hline
|
|
Devoto2005\_LQ\\
|
|
\hline
|
|
Devoto2005\_PP+Devoto2005\_AP\\
|
|
\hline
|
|
Devoto2005\_LT+Devoto2005\_LH\\
|
|
\hline
|
|
Devoto2005\_VT\\
|
|
\hline
|
|
Devoto2005\_LL+Devoto2005\_CT\\
|
|
\hline
|
|
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
|
\hline
|
|
Freitas2006\\
|
|
\hline
|
|
Gibson2006\_GA1\\
|
|
\hline
|
|
Gibson2006\_GA2\\
|
|
\hline
|
|
Gibson2006\_SG\\
|
|
\hline
|
|
Gibson2006\_TA1\\
|
|
\hline
|
|
Gibson2006\_TA2\\
|
|
\hline
|
|
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
|
\hline
|
|
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
|
\hline
|
|
LemusJimenez2003\\
|
|
\hline
|
|
Lundgren2005\\
|
|
\hline
|
|
Marrero2013\\
|
|
\hline
|
|
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
|
\hline
|
|
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
|
\hline
|
|
Pinheiro2008\\
|
|
\hline
|
|
Trojelsgaard2015\_El Hierro\\
|
|
\hline
|
|
Trojelsgaard2015\_La Gomera\\
|
|
\hline
|
|
Trojelsgaard2015\_Gran Canaria\\
|
|
\hline
|
|
Trojelsgaard2015\_Fuerteventura\\
|
|
\hline
|
|
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
|
\hline
|
|
Trojelsgaard2015\_Western Sahara\\
|
|
\hline
|
|
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
|
\hline
|
|
Zackenberg\\
|
|
\hline
|
|
Yoshihara2008\\
|
|
\hline
|
|
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
|
\hline
|
|
Kato1993\\
|
|
\hline
|
|
KatoMiura1996\\
|
|
\hline
|
|
Kakutani1990\\
|
|
\hline
|
|
Inoue1990\\
|
|
\hline
|
|
Fragoso\_RA1+Fragoso\_RD2\\
|
|
\hline
|
|
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
|
\hline
|
|
PopicThesis\\
|
|
\hline
|
|
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
|
\hline
|
|
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
|
\hline
|
|
Pornon2017\\
|
|
\hline
|
|
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
|
\hline
|
|
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
|
\hline
|
|
Blumel2016\\
|
|
\hline
|
|
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
|
\hline
|
|
Kantsa2018\\
|
|
\hline
|
|
Souza\_cerrado\\
|
|
\hline
|
|
Souza\_chaco\\
|
|
\hline
|
|
Souza\_pantanal\\
|
|
\hline
|
|
Souza\_vereda\\
|
|
\hline
|
|
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
|
\hline
|
|
Robinson2018\\
|
|
\hline
|
|
Bennett2018\\
|
|
\hline
|
|
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
|
\hline
|
|
Adedoja2019\\
|
|
\hline
|
|
CordenizPicanco2018\_NatFor\\
|
|
\hline
|
|
CordenizPicanco2018\_NatVeg\\
|
|
\hline
|
|
CordenizPicanco2018\_ExoFor\\
|
|
\hline
|
|
CordenizPicanco2018\_SemiPast\\
|
|
\hline
|
|
CordenizPicanco2018\_IntPast\\
|
|
\hline
|
|
Benadi2018\\
|
|
\hline
|
|
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
|
\hline
|
|
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
|
\hline
|
|
Oleques2019\\
|
|
\hline
|
|
Biella2019\\
|
|
\hline
|
|
Jolls2019\\
|
|
\hline
|
|
Nel2017\\
|
|
\hline
|
|
Villalobos2019\\
|
|
\hline
|
|
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
|
\hline
|
|
Traveset2013\_Fernandina\\
|
|
\hline
|
|
Traveset2013\_Pinta\\
|
|
\hline
|
|
Traveset2013\_Santiago\\
|
|
\hline
|
|
Traveset2013\_SantaCruz\\
|
|
\hline
|
|
Traveset2013\_SanCristobal\\
|
|
\hline
|
|
Ferrero2013\\
|
|
\hline
|
|
Simanonok2014\\
|
|
\hline
|
|
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
|
\hline
|
|
Neli2014\\
|
|
\hline
|
|
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
|
\hline
|
|
Baldock2019\_Bristol\\
|
|
\hline
|
|
Baldock2019\_Edinburgh\\
|
|
\hline
|
|
Baldock2019\_Leeds\\
|
|
\hline
|
|
Baldock2019\_Reading\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
|
connectivité).
|
|
|
|
Pour la collection 1 :
|
|
\[\begin{bmatrix} 0.77 &0.91 &0.64 &0.73 &0.09 &0.34 &0.98 &0.9 &0.41 \\0.63 &0.09 &0.15 &0.94 &0.56 &0.6 &0.25 &0.24 &0.05 \\0.59 &0.73 &0.19 &0.38 &0.04 &0.09 &0.51 &0.22 &0.46 \\0.07 &0.19 &0.02 &0.73 &0.58 &0.2 &0.22 &0.04 &0.03 \\0.69 &0.13 &0.34 &0.03 &0.1 &0.01 &0.53 &0.33 &0.08 \\0.09 &0.02 &0.01 &0.27 &0.06 &0.12 &0.01 &0.04 &0 \\ \end{bmatrix}\]
|
|
|
|
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}{%
|
|
\subsubsection{Répartition dans les clusters selon la
|
|
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-2}}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/rho_plot_taxonomy_pollinators-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/rho_plot_taxonomy_pollinators-2.pdf}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/rho_plot_taxonomy_plants-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/rho_plot_taxonomy_plants-2.pdf}
|
|
|
|
\hypertarget{clustering-avec-le-moduxe8le-pirho}{%
|
|
\subsection{Clustering avec le modèle
|
|
pirho}\label{clustering-avec-le-moduxe8le-pirho}}
|
|
|
|
Avec le modèle \emph{pirho} nous obtenons les 15 collections et les
|
|
structures suivantes:
|
|
|
|
Pour la collection 1
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-1.pdf}
|
|
\caption{Collection 1 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
arroyo1982\_1+arroyo1982\_2+arroyo3\\
|
|
\hline
|
|
dupont2003\\
|
|
\hline
|
|
petanidou1991\\
|
|
\hline
|
|
Aizen2008\_Challhuaco\_U+Aizen2008\_Challhuaco\_D\\
|
|
\hline
|
|
Aizen2008\_Llao-llao\_U+Aizen2008\_Llao-llao\_D\\
|
|
\hline
|
|
Jedrzejewska2013\_Ochata+Jedrzejewska2013\_Kabaty\\
|
|
\hline
|
|
Pinheiro2008\\
|
|
\hline
|
|
Souza\_pantanal\\
|
|
\hline
|
|
Robinson2018\\
|
|
\hline
|
|
Jolls2019\\
|
|
\hline
|
|
Traveset2013\_Fernandina\\
|
|
\hline
|
|
Baldock2019\_Leeds\\
|
|
\hline
|
|
Baldock2019\_Reading\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 2
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-2.pdf}
|
|
\caption{Collection 2 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Benadi2013\_3(1340m)\\
|
|
\hline
|
|
Trojelsgaard2015\_La Gomera\\
|
|
\hline
|
|
CordenizPicanco2018\_SemiPast\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 3
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-3.pdf}
|
|
\caption{Collection 3 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Kato2000\\
|
|
\hline
|
|
Freitas2006\\
|
|
\hline
|
|
Inoue1990\\
|
|
\hline
|
|
Souza\_cerrado\\
|
|
\hline
|
|
Adedoja2019\\
|
|
\hline
|
|
Baldock2019\_Bristol\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 4
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-4.pdf}
|
|
\caption{Collection 4 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Aizen2008\_Puerto Blest\_U+Aizen2008\_Puerto Blest\_D\\
|
|
\hline
|
|
LemusJimenez2003\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 5
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-5.pdf}
|
|
\caption{Collection 5 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
inouye1988\\
|
|
\hline
|
|
Junker2013\\
|
|
\hline
|
|
Kehinde2014\_Joostenberg\_Conv+Kehinde2014\_Joostenberg\_Org+Kehinde2014\_Joostenberg\_Nat+Kehinde2014\_Laibach\_Conv+Kehinde2014\_Laibach\_Org+Kehinde2014\_Laibach\_Nat+Kehinde2014\_Spier\_Conv+Kehinde2014\_Spier\_Nat\\
|
|
\hline
|
|
Watts2016\_Chicon+Watts2016\_Mantanay+Watts2016\_Choquebamba+Watts2016\_Huaran+Watts2016\_Piscacucho+Watts2016\_Poques+Watts2016\_Pumamarca+Watts2016\_Tiaparo+Watts2016\_Yanacocha\\
|
|
\hline
|
|
Kakutani1990\\
|
|
\hline
|
|
Fragoso\_RA1+Fragoso\_RD2\\
|
|
\hline
|
|
Souza\_chaco\\
|
|
\hline
|
|
Oleques2019\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 6
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-6.pdf}
|
|
\caption{Collection 6 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
medan2002ld\\
|
|
\hline
|
|
small1976\\
|
|
\hline
|
|
smith-ramirez2005\\
|
|
\hline
|
|
Benadi2013\_1(950m)+Benadi2013\_2(1170m)+Benadi2013\_6(2020m)\\
|
|
\hline
|
|
Shay2016\\
|
|
\hline
|
|
Aizen2008\_Cerro Otto\_U+Aizen2008\_Cerro Otto\_D\\
|
|
\hline
|
|
Lundgren2005\\
|
|
\hline
|
|
Zackenberg\\
|
|
\hline
|
|
Carstensen\_Gigante+Carstensen\_Paulino+Carstensen\_Tinkerbell+Carstensen\_Midway+Carstensen\_Cedro+Carstensen\_Elefante+Carstensen\_Soizig\\
|
|
\hline
|
|
Welti\_ID+Welti\_K1B+Welti\_K4A+Welti\_4B+Welti\_20B+Welti\_20C+Welti\_N1A+Welti\_N1B+Welti\_N4A+Welti\_N4B+Welti\_N20A+Welti\_N20B\\
|
|
\hline
|
|
Bennett2018\\
|
|
\hline
|
|
CordenizPicanco2018\_NatFor\\
|
|
\hline
|
|
CordenizPicanco2018\_ExoFor\\
|
|
\hline
|
|
CordenizPicanco2018\_IntPast\\
|
|
\hline
|
|
Benadi2018\\
|
|
\hline
|
|
Villalobos2019\\
|
|
\hline
|
|
Traveset2013\_Santiago\\
|
|
\hline
|
|
Traveset2013\_SantaCruz\\
|
|
\hline
|
|
Son2019\_a1+Son2019\_a2+Son2019\_a3+Son2019\_a4+Son2019\_a5+Son2019\_a6+Son2019\_a7+Son2019\_a8+Son2019\_F1+Son2019\_F2+Son2019\_F3+Son2019\_F4+Son2019\_F5+Son2019\_F6+Son2019\_F7+Son2019\_F8\\
|
|
\hline
|
|
Sritongchuay2019\_near+Sritongchuay2019\_far\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 7
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-7.pdf}
|
|
\caption{Collection 7 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
medan2002rb\\
|
|
\hline
|
|
olensen2002flo\\
|
|
\hline
|
|
vazquez2002\\
|
|
\hline
|
|
Trojelsgaard2015\_Gran Canaria\\
|
|
\hline
|
|
Trojelsgaard2015\_Western Sahara\\
|
|
\hline
|
|
LaraRomero2019\_blanca+LaraRomero2019\_rajada+LaraRomero2019\_refugio+LaraRomero2019\_torre\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 8
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-8.pdf}
|
|
\caption{Collection 8 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Weiner2011\\
|
|
\hline
|
|
Kaiser\_control+Kaiser\_restored\\
|
|
\hline
|
|
Gilarranz2014\_amarante+Gilarranz2014\_barrosa+Gilarranz2014\_cincocerros+Gilarranz2014\_difuntito+Gilarranz2014\_difuntos+Gilarranz2014\_elmorro+Gilarranz2014\_labrava+Gilarranz2014\_lachata+Gilarranz2014\_lapaja+Gilarranz2014\_piedraalta+Gilarranz2014\_vigilancia+Gilarranz2014\_volcan\\
|
|
\hline
|
|
Kaiser-Bunbury2017\_Bernica+Kaiser-Bunbury2017\_Casse-dent+Kaiser-Bunbury2017\_Copolia+Kaiser-Bunbury2017\_La-Reserve+Kaiser-Bunbury2017\_Rosebelle+Kaiser-Bunbury2017\_Salazie+Kaiser-Bunbury2017\_Tea-Plantation+Kaiser-Bunbury2017\_Trois-Freres\\
|
|
\hline
|
|
Fang2012\\
|
|
\hline
|
|
Gibson2006\_SG\\
|
|
\hline
|
|
Gibson2006\_TA1\\
|
|
\hline
|
|
Trojelsgaard2015\_Fuerteventura\\
|
|
\hline
|
|
Pfeiffer\_CNE+Pfeiffer\_CNM+Pfeiffer\_CNT+Pfeiffer\_CPB+Pfeiffer\_CPM+Pfeiffer\_CPR+Pfeiffer\_CPS+Pfeiffer\_M2+Pfeiffer\_RP1+Pfeiffer\_RP2+Pfeiffer\_LM+Pfeiffer\_LO+Pfeiffer\_BD+Pfeiffer\_BH+Pfeiffer\_BS\\
|
|
\hline
|
|
Biella2019\\
|
|
\hline
|
|
Nel2017\\
|
|
\hline
|
|
Ferrero2013\\
|
|
\hline
|
|
Neli2014\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 9
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-9.pdf}
|
|
\caption{Collection 9 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
eberling1999\\
|
|
\hline
|
|
ramirez1992\\
|
|
\hline
|
|
Struck1994\\
|
|
\hline
|
|
Albrecht2010\_49yr+Albrecht2010\_63yr+Albrecht2010\_84yr+Albrecht2010\_109yr+Albrecht2010\_130yr\\
|
|
\hline
|
|
Devoto2005\_PP+Devoto2005\_AP\\
|
|
\hline
|
|
Devoto2005\_VT\\
|
|
\hline
|
|
Gibson2006\_TA2\\
|
|
\hline
|
|
MonteroCastano2017\_Albufera+MonteroCastano2017\_Llimpa+MonteroCastano2017\_Tirant\\
|
|
\hline
|
|
Yoshihara2008\\
|
|
\hline
|
|
PopicThesis\\
|
|
\hline
|
|
Orford\_B1+Orford\_B2+Orford\_B3+Orford\_B4+Orford\_B5+Orford\_B10\\
|
|
\hline
|
|
Souza\_vereda\\
|
|
\hline
|
|
Adedoja2018b\_baseZone+Adedoja2018b\_MidZone+Adedoja2018b\_HighZone+Adedoja2018b\_PeakZone\\
|
|
\hline
|
|
Hackett2019\_NZ\_salt\_marsh+Hackett2019\_NZ\_sand\_dune+Hackett2019\_NZ\_scrub\_coprosma\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 10
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-10.pdf}
|
|
\caption{Collection 10 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
herrera1988\\
|
|
\hline
|
|
Burkle2013\\
|
|
\hline
|
|
bartomeus2008\\
|
|
\hline
|
|
Olito-Fox2014\\
|
|
\hline
|
|
Benadi2013\_4(1700m)+Benadi2013\_5(1800m)\\
|
|
\hline
|
|
Baldock2011\_TB+Baldock2011\_JN\\
|
|
\hline
|
|
Chamberlain\_HLU+Chamberlain\_HLG+Chamberlain\_OKU+Chamberlain\_OKG+Chamberlain\_WLU+Chamberlain\_WLG+Chamberlain\_SOU+Chamberlain\_SOG\\
|
|
\hline
|
|
Chamberlain\_Site1+Chamberlain\_Site2+Chamberlain\_Site3+Chamberlain\_Site4+Chamberlain\_Site5+Chamberlain\_Site6\\
|
|
\hline
|
|
Devoto2005\_LQ\\
|
|
\hline
|
|
Devoto2005\_LT+Devoto2005\_LH\\
|
|
\hline
|
|
Devoto2005\_LL+Devoto2005\_CT\\
|
|
\hline
|
|
Dupont2009\_IsenBjerg+Dupont2009\_Other\\
|
|
\hline
|
|
Gibson2006\_GA1\\
|
|
\hline
|
|
LaraRomero2016\_pe?alara\_EP+LaraRomero2016\_pe?alara\_PA+LaraRomero2016\_nevero\_EP+LaraRomero2016\_nevero\_PA\\
|
|
\hline
|
|
Marrero2013\\
|
|
\hline
|
|
Trojelsgaard2015\_Tenerife Teno Bajo+Trojelsgaard2015\_Tenerife Fasnia\\
|
|
\hline
|
|
Vanbergen2013\_balfarm+Vanbergen2013\_bridgend+Vanbergen2013\_dalhaikie+Vanbergen2013\_netherton+Vanbergen2013\_backhill+Vanbergen2013\_corntulloch+Vanbergen2013\_allancreich\\
|
|
\hline
|
|
Fragoso\_RA2+Fragoso\_RA3+Fragoso\_RD1+Fragoso\_RD3\\
|
|
\hline
|
|
Pornon2017\\
|
|
\hline
|
|
Orford\_B6+Orford\_B7+Orford\_B8+Orford\_B9\\
|
|
\hline
|
|
Blumel2016\\
|
|
\hline
|
|
Kantsa2018\\
|
|
\hline
|
|
Grass2013\_1+Grass2013\_2+Grass2013\_3+Grass2013\_4+Grass2013\_5+Grass2013\_6+Grass2013\_7+Grass2013\_8+Grass2013\_9+Grass2013\_10+Grass2013\_11+Grass2013\_12+Grass2013\_13+Grass2013\_14+Grass2013\_15+Grass2013\_16+Grass2013\_17\\
|
|
\hline
|
|
CordenizPicanco2018\_NatVeg\\
|
|
\hline
|
|
Hackett2019\_UK\_sand\_dune+Hackett2019\_UK\_grassland+Hackett2019\_UK\_heathland+Hackett2019\_UK\_woodland+Hackett2019\_UK\_salt\_marsh+Hackett2019\_UK\_scrub\\
|
|
\hline
|
|
Traveset2013\_Pinta\\
|
|
\hline
|
|
Traveset2013\_SanCristobal\\
|
|
\hline
|
|
Simanonok2014\\
|
|
\hline
|
|
Baldock2019\_Edinburgh\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 11
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-11.pdf}
|
|
\caption{Collection 11 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
kato1990\\
|
|
\hline
|
|
ramirez1989\\
|
|
\hline
|
|
Kato1993\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 12
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-12.pdf}
|
|
\caption{Collection 12 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Chamberlain\_cr1+Chamberlain\_cr2+Chamberlain\_fs1+Chamberlain\_fs2+Chamberlain\_go1+Chamberlain\_go2+Chamberlain\_mm1+Chamberlain\_mm2+Chamberlain\_mz1+Chamberlain\_mz2+Chamberlain\_sm1+Chamberlain\_sm2\\
|
|
\hline
|
|
Dattilo2016\\
|
|
\hline
|
|
KatoMiura1996\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 13
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-13.pdf}
|
|
\caption{Collection 13 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
olensen2002aig\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 14
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-14.pdf}
|
|
\caption{Collection 14 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Trojelsgaard2015\_El Hierro\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Pour la collection 15
|
|
|
|
\begin{figure}
|
|
\centering
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_meso_plot-15.pdf}
|
|
\caption{Collection 15 - pirho}
|
|
\end{figure}
|
|
|
|
\begin{tabular}{l}
|
|
\hline
|
|
Networks\\
|
|
\hline
|
|
Gibson2006\_GA2\\
|
|
\hline
|
|
\end{tabular}
|
|
|
|
Et voici donc les valeurs numériques pour les \(\alpha\) (paramètres de
|
|
connectivité).
|
|
|
|
Pour la collection 1 :
|
|
\[\begin{bmatrix} 0.52 &0.6 &0.34 &0.1 &0.15 &0 &0.36 \\0.12 &0.93 &0.01 &0.01 &0 &0.61 &0.16 \\0.05 &0.31 &0.02 &0.08 &0.37 &0.27 &0.12 \\0.04 &0.05 &0.01 &0.38 &0.03 &0.01 &0.17 \\0 &0.03 &0.16 &0.11 &0.04 &0.01 &0.01 \\0.01 &0.22 &0.02 &0.01 &0.05 &0 &0.01 \\ \end{bmatrix}\]
|
|
Pour la collection 2 :
|
|
\[\begin{bmatrix} 0.66 &0.23 \\0.2 &0.05 \\ \end{bmatrix}\] Pour la
|
|
collection 3 :
|
|
\[\begin{bmatrix} 0.64 &0.32 &0.11 &0.53 &0.19 &0.05 \\0.47 &0.21 &0.02 &0.19 &0.07 &0.03 \\0.16 &0.05 &0.01 &0.07 &0.01 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 4 :
|
|
\[\begin{bmatrix} 0.45 &0.07 \\0.22 &0.62 \\0.23 &0.04 \\ \end{bmatrix}\]
|
|
Pour la collection 5 :
|
|
\[\begin{bmatrix} 0.78 &0.43 &0.16 &0.56 \\0.29 &0.04 &0.22 &0.08 \\0.02 &0.12 &0.03 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 6 :
|
|
\[\begin{bmatrix} 0.82 &0.63 &0.2 &0.74 \\0.34 &0.07 &0.41 &0.13 \\0.02 &0.16 &0.03 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 7 :
|
|
\[\begin{bmatrix} 0.9 &0.46 &0.72 \\0.17 &0.37 &0.03 \\ \end{bmatrix}\]
|
|
Pour la collection 8 :
|
|
\[\begin{bmatrix} 0.66 &0.97 &0.72 &1 &0.13 &0.71 &0 \\0.99 &0.93 &0.84 &0.64 &0.5 &0.11 &0.17 \\0.71 &0.7 &0.28 &0.32 &0.13 &0.07 &0.05 \\0.96 &0.46 &0.75 &0.14 &0.39 &0.01 &0.07 \\0.62 &0.36 &0.09 &0.11 &0.04 &0.02 &0.01 \\0.62 &0.12 &0.43 &0.02 &0.17 &0 &0.02 \\0.33 &0.03 &0.14 &0 &0.03 &0 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 9 :
|
|
\[\begin{bmatrix} 0.59 &0.17 &0.32 \\0.06 &0.15 &0.02 \\ \end{bmatrix}\]
|
|
Pour la collection 10 :
|
|
\[\begin{bmatrix} 0.91 &0.62 &0.3 &0.79 &0.44 \\0.15 &0.7 &0.32 &0.07 &0.36 \\0.15 &0.03 &0.16 &0.05 &0.01 \\ \end{bmatrix}\]
|
|
Pour la collection 11 :
|
|
\[\begin{bmatrix} 0.09 &0.36 &1 &0.12 &0.41 \\0.33 &0 &0.07 &0.46 &0.09 \\0 &0.01 &0.07 &0.14 &0 \\0.03 &0.16 &0.02 &0 &0 \\ \end{bmatrix}\]
|
|
Pour la collection 12 :
|
|
\[\begin{bmatrix} 0.68 &0.37 &0.12 \\0.41 &0.17 &0.04 \\0.19 &0.05 &0.01 \\ \end{bmatrix}\]
|
|
Pour la collection 13 : \[\begin{bmatrix} 0.78 \\0.19 \\ \end{bmatrix}\]
|
|
Pour la collection 14 : \[\begin{bmatrix} 0.44 &0.08 \\ \end{bmatrix}\]
|
|
Pour la collection 15 :
|
|
\[\begin{bmatrix} 0.42 &1 \\0.35 &0.01 \\ \end{bmatrix}\]
|
|
|
|
\hypertarget{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}{%
|
|
\subsubsection{Répartition dans les clusters selon la
|
|
taxonomie}\label{ruxe9partition-dans-les-clusters-selon-la-taxonomie-3}}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_plot_taxonomy_pollinators-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_plot_taxonomy_pollinators-2.pdf}
|
|
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_plot_taxonomy_plants-1.pdf}
|
|
\includegraphics{presentation_dore_files/figure-latex/pirho_plot_taxonomy_plants-2.pdf}
|
|
|
|
\end{document}
|