Deploy site [CI SKIP]
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@ -293,7 +293,7 @@ Agenda
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<h2 data-number="1" class="anchored" data-anchor-id="base-de-connaissances-et-trucs-en-vrac"><span class="header-section-number">1</span> Base de connaissances et trucs en vrac</h2>
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<h2 data-number="1" class="anchored" data-anchor-id="base-de-connaissances-et-trucs-en-vrac"><span class="header-section-number">1</span> Base de connaissances et trucs en vrac</h2>
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<div class="quarto-post image-right" data-index="0" data-categories="YXBwbGljYXRpb24lMkNhZ3JpY29sZSUyQ2dyYXBoZSUyQ2NvbGxlY3Rpb24lMkNsYm0lMkNzYm0=" data-listing-date-sort="1778500323000" data-listing-file-modified-sort="1778500323569" data-listing-date-modified-sort="1778500323000" data-listing-reading-time-sort="2" data-listing-word-count-sort="244">
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<div class="quarto-post image-right" data-index="0" data-categories="YXBwbGljYXRpb24lMkNhZ3JpY29sZSUyQ2dyYXBoZSUyQ2NvbGxlY3Rpb24lMkNsYm0lMkNzYm0=" data-listing-date-sort="1778501098000" data-listing-file-modified-sort="1778501098045" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="2" data-listing-word-count-sort="244">
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<div class="quarto-post image-right" data-index="1" data-categories="Y29udm9sdXRpb24lMkNtYWNoaW5lJTIwbGVhcm5pbmclMkN2YWUlMkNncmFwaGVz" data-listing-date-sort="1778501098000" data-listing-file-modified-sort="1778501098046" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="2" data-listing-word-count-sort="223">
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<div class="quarto-post image-right" data-index="2" data-categories="cGh5bG9nJUMzJUE5bmllJTJDZ3JhcGhlcyUyQ2xibSUyQ3NibQ==" data-listing-date-sort="1778501098000" data-listing-file-modified-sort="1778501098046" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="8" data-listing-word-count-sort="1430">
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<h2 data-number="2" class="anchored" data-anchor-id="journaux"><span class="header-section-number">2</span> Journaux</h2>
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<h2 data-number="2" class="anchored" data-anchor-id="journaux"><span class="header-section-number">2</span> Journaux</h2>
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<div class="quarto-post image-right" data-index="0" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1773619200000" data-listing-file-modified-sort="1778500323594" data-listing-date-modified-sort="1778500323000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1318">
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<div class="quarto-post image-right" data-index="0" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1773619200000" data-listing-file-modified-sort="1778501098070" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1318">
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<p class="card-img-top"><img src="suivi/2026-12/figs/Multipartite.svg" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)" class="thumbnail-image card-img"/></p>
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<p class="card-img-top"><img src="suivi/2026-12/figs/Multipartite.svg" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)" class="thumbnail-image card-img"/></p>
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<div class="quarto-post image-right" data-index="1" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1771804800000" data-listing-file-modified-sort="1778501098071" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="4" data-listing-word-count-sort="757">
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<p class="card-img-top"><img src="suivi/2026-9/figs/Multipartite.svg" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)" class="thumbnail-image card-img"/></p>
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<p class="card-img-top"><img src="suivi/2026-9/figs/Multipartite.svg" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)" class="thumbnail-image card-img"/></p>
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@ -481,7 +481,7 @@ Louis Lacoste
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<div class="quarto-post image-right" data-index="2" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTiUyQ2NvdmFyaWFibGVzJTJDaWRlbnRpZmlhYmlsaXQlQzMlQTk=" data-listing-date-sort="1770940800000" data-listing-file-modified-sort="1778501098070" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1298">
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||||||
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||||||
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||||||
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||||||
<p class="card-img-top"><img data-src="suivi/2025-24/figs/ari-clustering-desc&asc9.png" alt="9 réseaux - ARI pour le clustering avec modèles iid, procédure descendante et descendante&ascendante" class="thumbnail-image card-img"/></p>
|
<p class="card-img-top"><img data-src="suivi/2025-24/figs/ari-clustering-desc&asc9.png" alt="9 réseaux - ARI pour le clustering avec modèles iid, procédure descendante et descendante&ascendante" class="thumbnail-image card-img"/></p>
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||||||
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|
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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||||||
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|
||||||
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||||||
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|
||||||
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|
||||||
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||||||
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||||||
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|
||||||
<p class="card-img-top"><img data-src="suivi/2025-15/figs/alluvial-clusterings.png" class="thumbnail-image card-img"/></p>
|
<p class="card-img-top"><img data-src="suivi/2025-15/figs/alluvial-clusterings.png" class="thumbnail-image card-img"/></p>
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||||||
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|
||||||
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||||||
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|
||||||
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||||||
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|
||||||
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<div class="listing-item-img-placeholder card-img-top" > </div>
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<div class="listing-item-img-placeholder card-img-top" > </div>
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@ -1321,7 +1321,7 @@ Louis Lacoste
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</a>
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<div class="quarto-post image-right" data-index="27" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1742169600000" data-listing-file-modified-sort="1778500323570" data-listing-date-modified-sort="1778500323000" data-listing-reading-time-sort="3" data-listing-word-count-sort="426">
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<div class="quarto-post image-right" data-index="27" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1742169600000" data-listing-file-modified-sort="1778501098046" data-listing-date-modified-sort="1778501098000" data-listing-reading-time-sort="3" data-listing-word-count-sort="426">
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<div class="thumbnail"><a href="./suivi/2025-13/2025-13.html" class="no-external">
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<p class="card-img-top"><img data-src="suivi/2025-13/figs/baldock_meso_iid.png" alt="Baldock iid" class="thumbnail-image card-img"/></p>
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<p class="card-img-top"><img data-src="suivi/2025-13/figs/baldock_meso_iid.png" alt="Baldock iid" class="thumbnail-image card-img"/></p>
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@ -182,7 +182,11 @@ window.Quarto = {
|
||||||
<li><a href="#formalisation-du-modèle-1" id="toc-formalisation-du-modèle-1" class="nav-link" data-scroll-target="#formalisation-du-modèle-1"><span class="header-section-number">4.1</span> Formalisation du modèle</a></li>
|
<li><a href="#formalisation-du-modèle-1" id="toc-formalisation-du-modèle-1" class="nav-link" data-scroll-target="#formalisation-du-modèle-1"><span class="header-section-number">4.1</span> Formalisation du modèle</a></li>
|
||||||
</ul></li>
|
</ul></li>
|
||||||
<li><a href="#échantillonnage-selon-larbre" id="toc-échantillonnage-selon-larbre" class="nav-link" data-scroll-target="#échantillonnage-selon-larbre"><span class="header-section-number">5</span> Échantillonnage selon l’arbre</a></li>
|
<li><a href="#échantillonnage-selon-larbre" id="toc-échantillonnage-selon-larbre" class="nav-link" data-scroll-target="#échantillonnage-selon-larbre"><span class="header-section-number">5</span> Échantillonnage selon l’arbre</a></li>
|
||||||
<li><a href="#latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" id="toc-latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" class="nav-link" data-scroll-target="#latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie"><span class="header-section-number">6</span> <em>Latent Position Model</em> (LPM) avec phylogénie des représentations latentes selon la phylogénie</a></li>
|
<li><a href="#latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" id="toc-latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" class="nav-link" data-scroll-target="#latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie"><span class="header-section-number">6</span> <em>Latent Position Model</em> (LPM) avec phylogénie des représentations latentes selon la phylogénie</a>
|
||||||
|
<ul class="collapse">
|
||||||
|
<li><a href="#classique" id="toc-classique" class="nav-link" data-scroll-target="#classique"><span class="header-section-number">6.1</span> Classique</a></li>
|
||||||
|
<li><a href="#deep-lpm" id="toc-deep-lpm" class="nav-link" data-scroll-target="#deep-lpm"><span class="header-section-number">6.2</span> <em>Deep</em> LPM</a></li>
|
||||||
|
</ul></li>
|
||||||
</ul>
|
</ul>
|
||||||
</nav>
|
</nav>
|
||||||
</div>
|
</div>
|
||||||
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|
@ -393,8 +397,15 @@ V \Gamma & \approx \log((\pmb{\pi}^i)_{i=1,\dots,n_1}) = \log(\pmb{\Pi})
|
||||||
</section>
|
</section>
|
||||||
<section id="latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" class="level1" data-number="6">
|
<section id="latent-position-model-lpm-avec-phylogénie-des-représentations-latentes-selon-la-phylogénie" class="level1" data-number="6">
|
||||||
<h1 data-number="6"><span class="header-section-number">6</span> <em>Latent Position Model</em> (LPM) avec phylogénie des représentations latentes selon la phylogénie</h1>
|
<h1 data-number="6"><span class="header-section-number">6</span> <em>Latent Position Model</em> (LPM) avec phylogénie des représentations latentes selon la phylogénie</h1>
|
||||||
|
<section id="classique" class="level2" data-number="6.1">
|
||||||
|
<h2 data-number="6.1" class="anchored" data-anchor-id="classique"><span class="header-section-number">6.1</span> Classique</h2>
|
||||||
|
</section>
|
||||||
|
<section id="deep-lpm" class="level2" data-number="6.2">
|
||||||
|
<h2 data-number="6.2" class="anchored" data-anchor-id="deep-lpm"><span class="header-section-number">6.2</span> <em>Deep</em> LPM</h2>
|
||||||
|
<p>Possibilité d’utilisé un encodeur qui soit un réseau de neurones et de bénéficier de tous les décodeurs de la littérature LPM. <strong>Quel est le lien avec le VGAE ?</strong> <strong>Avantage de passage à l’échelle??</strong></p>
|
||||||
|
|
||||||
|
|
||||||
|
</section>
|
||||||
</section>
|
</section>
|
||||||
|
|
||||||
</main> <!-- /main -->
|
</main> <!-- /main -->
|
||||||
|
|
|
||||||
14
search.json
14
search.json
|
|
@ -69,6 +69,20 @@
|
||||||
"section": "4.1 Formalisation du modèle",
|
"section": "4.1 Formalisation du modèle",
|
||||||
"text": "4.1 Formalisation du modèle\nPierre a proposé que l’on pose une structure latente sur les \\pmb{Z}. C’est à dire \\begin{align*}\n & P \\sim \\mathcal{N}_{n_1, K-1} (O_{n_1, K-1}, \\Sigma, \\sigma^2 Id_{K-1}), \\\\\n \\forall i \\in \\{1,\\dots,n_1\\}, & Z_i \\mid P_i \\overset{ind}{\\sim} \\mathop{\\mathrm{Cat}}_{K} ({\\mathop{\\mathrm{ilr}}}^{-1}(P_i) = \\pi_{1:K}^{(i)}), \\\\\n \\forall j \\in \\{1,\\dots,n_2\\}, & W_j \\overset{iid}{\\sim} \\mathop{\\mathrm{Cat}}_R (\\rho_{1:R}),\\\\\n \\forall i,j \\in \\{1,\\dots,n_1\\}\\times\\{1,\\dots,n_2\\}, & Y_{ij} \\mid Z_i = k, W_j = r \\overset{ind}{\\sim} \\mathcal{F}(\\alpha_{qr}),\n\\end{align*} avec \\Sigma, la matrice de variance-covariance déterminée en fonction de l’apparentement (phylogénétique) des noeuds.\n\n\n\nLe DAG simplifié du modèle"
|
"text": "4.1 Formalisation du modèle\nPierre a proposé que l’on pose une structure latente sur les \\pmb{Z}. C’est à dire \\begin{align*}\n & P \\sim \\mathcal{N}_{n_1, K-1} (O_{n_1, K-1}, \\Sigma, \\sigma^2 Id_{K-1}), \\\\\n \\forall i \\in \\{1,\\dots,n_1\\}, & Z_i \\mid P_i \\overset{ind}{\\sim} \\mathop{\\mathrm{Cat}}_{K} ({\\mathop{\\mathrm{ilr}}}^{-1}(P_i) = \\pi_{1:K}^{(i)}), \\\\\n \\forall j \\in \\{1,\\dots,n_2\\}, & W_j \\overset{iid}{\\sim} \\mathop{\\mathrm{Cat}}_R (\\rho_{1:R}),\\\\\n \\forall i,j \\in \\{1,\\dots,n_1\\}\\times\\{1,\\dots,n_2\\}, & Y_{ij} \\mid Z_i = k, W_j = r \\overset{ind}{\\sim} \\mathcal{F}(\\alpha_{qr}),\n\\end{align*} avec \\Sigma, la matrice de variance-covariance déterminée en fonction de l’apparentement (phylogénétique) des noeuds.\n\n\n\nLe DAG simplifié du modèle"
|
||||||
},
|
},
|
||||||
|
{
|
||||||
|
"objectID": "knowledge_base/projets-phylo.html#classique",
|
||||||
|
"href": "knowledge_base/projets-phylo.html#classique",
|
||||||
|
"title": "Idées autour de l’inclusion de la phylogénie",
|
||||||
|
"section": "6.1 Classique",
|
||||||
|
"text": "6.1 Classique"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"objectID": "knowledge_base/projets-phylo.html#deep-lpm",
|
||||||
|
"href": "knowledge_base/projets-phylo.html#deep-lpm",
|
||||||
|
"title": "Idées autour de l’inclusion de la phylogénie",
|
||||||
|
"section": "6.2 Deep LPM",
|
||||||
|
"text": "6.2 Deep LPM\nPossibilité d’utilisé un encodeur qui soit un réseau de neurones et de bénéficier de tous les décodeurs de la littérature LPM. Quel est le lien avec le VGAE ? Avantage de passage à l’échelle??"
|
||||||
|
},
|
||||||
{
|
{
|
||||||
"objectID": "knowledge_base/colsbm_application_reseaux_et_agri.html",
|
"objectID": "knowledge_base/colsbm_application_reseaux_et_agri.html",
|
||||||
"href": "knowledge_base/colsbm_application_reseaux_et_agri.html",
|
"href": "knowledge_base/colsbm_application_reseaux_et_agri.html",
|
||||||
|
|
|
||||||
Loading…
Add table
Reference in a new issue