polarolouis/these-recap-hebdo
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Deploy site [CI SKIP]

Browse source
This commit is contained in:
Woodpecker CI 2026-02-24 13:31:19 +00:00
parent 5ba620c54f
commit 3b51459895
30 changed files with 52120 additions and 414 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

92
index.html
View file

@ -195,7 +195,7 @@ window.Quarto = {
<li><a href="#journaux" id="toc-journaux" class="nav-link active" data-scroll-target="#journaux">Journaux</a></li>
</ul>
</nav>
<h5 class="quarto-listing-category-title">Catégories</h5><div class="quarto-listing-category category-default"><div class="category" data-category="">Tous <span class="quarto-category-count">(26)</span></div><div class="category" data-category="Y29sQmlTQk0=">colBiSBM <span class="quarto-category-count">(26)</span></div><div class="category" data-category="Y292YXJpYWJsZXM=">covariables <span class="quarto-category-count">(1)</span></div><div class="category" data-category="R05O">GNN <span class="quarto-category-count">(19)</span></div><div class="category" data-category="aWRlbnRpZmlhYmlsaXQlQzMlQTk=">identifiabilité <span class="quarto-category-count">(1)</span></div><div class="category" data-category="aW5mJUMzJUE5cmVuY2U=">inférence <span class="quarto-category-count">(21)</span></div></div></div>
<h5 class="quarto-listing-category-title">Catégories</h5><div class="quarto-listing-category category-default"><div class="category" data-category="">Tous <span class="quarto-category-count">(27)</span></div><div class="category" data-category="Y29sQmlTQk0=">colBiSBM <span class="quarto-category-count">(27)</span></div><div class="category" data-category="Y292YXJpYWJsZXM=">covariables <span class="quarto-category-count">(1)</span></div><div class="category" data-category="R05O">GNN <span class="quarto-category-count">(20)</span></div><div class="category" data-category="aWRlbnRpZmlhYmlsaXQlQzMlQTk=">identifiabilité <span class="quarto-category-count">(1)</span></div><div class="category" data-category="aW5mJUMzJUE5cmVuY2U=">inférence <span class="quarto-category-count">(22)</span></div></div></div>
<!-- main -->
<main class="content" id="quarto-document-content">
@ -225,14 +225,14 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Date de publication</div>
<div class="quarto-title-meta-contents">
<p class="date">17 février 2026</p>
<p class="date">24 février 2026</p>
</div>
</div>
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>
@ -264,7 +264,41 @@ Agenda
<h2 class="anchored" data-anchor-id="journaux">Journaux</h2>
<div id="listing-journal-these" class="quarto-listing quarto-listing-container-default">
<div class="list quarto-listing-default">
<div class="quarto-post image-right" data-index="0" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTiUyQ2NvdmFyaWFibGVzJTJDaWRlbnRpZmlhYmlsaXQlQzMlQTk=" data-listing-date-sort="1770940800000" data-listing-file-modified-sort="1771335629635" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1306">
<div class="quarto-post image-right" data-index="0" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1771804800000" data-listing-file-modified-sort="1771939815310" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="752">
<div class="thumbnail"><a href="./suivi/2026-9/2026-9.html" class="no-external">
<p class="card-img-top"><img src="suivi/2026-9/figs/Multipartite.svg" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)" class="thumbnail-image card-img"/></p>
</a></div>
<div class="body">
<h3 class="no-anchor listing-title">
<a href="./suivi/2026-9/2026-9.html" class="no-external">Bilan semaine 9 2026 : 23 février - 27 février</a>
</h3>
<div class="listing-categories">
<div class="listing-category" onclick="window.quartoListingCategory('Y29sQmlTQk0='); return false;">colBiSBM</div>
<div class="listing-category" onclick="window.quartoListingCategory('aW5mJUMzJUE5cmVuY2U='); return false;">inférence</div>
<div class="listing-category" onclick="window.quartoListingCategory('R05O'); return false;">GNN</div>
</div>
<div class="delink listing-description"><a href="./suivi/2026-9/2026-9.html" class="no-external">
Clustering unipartite j’ai cassé une fonction de distance à vérifier et réparer
</a></div>
</div>
<div class="metadata">
<a href="./suivi/2026-9/2026-9.html" class="no-external">
<div class="listing-date">
23 févr. 2026
</div>
<div class="listing-author">
Louis Lacoste
</div>
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="1" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTiUyQ2NvdmFyaWFibGVzJTJDaWRlbnRpZmlhYmlsaXQlQzMlQTk=" data-listing-date-sort="1770940800000" data-listing-file-modified-sort="1771939815310" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1306">
<div class="thumbnail"><a href="./suivi/2026-7/2026-7.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -302,7 +336,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="1" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1770940800000" data-listing-file-modified-sort="1771335629635" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="725">
<div class="quarto-post image-right" data-index="2" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1770940800000" data-listing-file-modified-sort="1771939815310" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="725">
<div class="thumbnail"><a href="./suivi/2026-8/2026-8.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -336,7 +370,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="2" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1770336000000" data-listing-file-modified-sort="1771335629635" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1333">
<div class="quarto-post image-right" data-index="3" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1770336000000" data-listing-file-modified-sort="1771939815310" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="7" data-listing-word-count-sort="1333">
<div class="thumbnail"><a href="./suivi/2026-6/2026-6.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -370,7 +404,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="3" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1766102400000" data-listing-file-modified-sort="1771335629634" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="8" data-listing-word-count-sort="1466">
<div class="quarto-post image-right" data-index="4" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1766102400000" data-listing-file-modified-sort="1771939815308" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="8" data-listing-word-count-sort="1466">
<div class="thumbnail"><a href="./suivi/2025-51/2025-51.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-51/figs/tendance_temps.png" class="thumbnail-image card-img"/></p>
@ -404,7 +438,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="4" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1765497600000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1010">
<div class="quarto-post image-right" data-index="5" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1765497600000" data-listing-file-modified-sort="1771939815308" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1010">
<div class="thumbnail"><a href="./suivi/2025-50/2025-50.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -438,7 +472,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="5" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1762128000000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="724">
<div class="quarto-post image-right" data-index="6" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1762128000000" data-listing-file-modified-sort="1771939815308" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="724">
<div class="thumbnail"><a href="./suivi/2025-45/2025-45.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -472,7 +506,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="6" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1761523200000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="645">
<div class="quarto-post image-right" data-index="7" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1761523200000" data-listing-file-modified-sort="1771939815308" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="645">
<div class="thumbnail"><a href="./suivi/2025-44/2025-44.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -506,7 +540,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="7" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1760918400000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="5" data-listing-word-count-sort="903">
<div class="quarto-post image-right" data-index="8" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1760918400000" data-listing-file-modified-sort="1771939815308" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="5" data-listing-word-count-sort="903">
<div class="thumbnail"><a href="./suivi/2025-43/2025-43.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -540,7 +574,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="8" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1758240000000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="668">
<div class="quarto-post image-right" data-index="9" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1758240000000" data-listing-file-modified-sort="1771939815307" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="668">
<div class="thumbnail"><a href="./suivi/2025-38/2025-38.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -574,7 +608,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="9" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1756425600000" data-listing-file-modified-sort="1771335629633" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="699">
<div class="quarto-post image-right" data-index="10" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1756425600000" data-listing-file-modified-sort="1771939815307" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="699">
<div class="thumbnail"><a href="./suivi/2025-35/2025-35.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -608,7 +642,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="10" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1755129600000" data-listing-file-modified-sort="1771335629632" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="792">
<div class="quarto-post image-right" data-index="11" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1755129600000" data-listing-file-modified-sort="1771939815307" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="792">
<div class="thumbnail"><a href="./suivi/2025-33/2025-33.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-33/figs/auc-model.png" class="thumbnail-image card-img"/></p>
@ -643,7 +677,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="11" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1752537600000" data-listing-file-modified-sort="1771335629632" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="14" data-listing-word-count-sort="2709">
<div class="quarto-post image-right" data-index="12" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1752537600000" data-listing-file-modified-sort="1771939815307" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="14" data-listing-word-count-sort="2709">
<div class="thumbnail"><a href="./suivi/2025-29/2025-29.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -678,7 +712,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="12" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1751846400000" data-listing-file-modified-sort="1771335629632" data-listing-date-modified-sort="1752192000000" data-listing-reading-time-sort="4" data-listing-word-count-sort="619">
<div class="quarto-post image-right" data-index="13" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1751846400000" data-listing-file-modified-sort="1771939815306" data-listing-date-modified-sort="1752192000000" data-listing-reading-time-sort="4" data-listing-word-count-sort="619">
<div class="thumbnail"><a href="./suivi/2025-28/2025-28.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -713,7 +747,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="13" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1751241600000" data-listing-file-modified-sort="1771335629632" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="3" data-listing-word-count-sort="519">
<div class="quarto-post image-right" data-index="14" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1751241600000" data-listing-file-modified-sort="1771939815306" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="3" data-listing-word-count-sort="519">
<div class="thumbnail"><a href="./suivi/2025-27/2025-27.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -748,7 +782,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="14" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1750377600000" data-listing-file-modified-sort="1771335629631" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="691">
<div class="quarto-post image-right" data-index="15" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1750377600000" data-listing-file-modified-sort="1771939815306" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="691">
<div class="thumbnail"><a href="./suivi/2025-25/2025-25.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -783,7 +817,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="15" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1749772800000" data-listing-file-modified-sort="1771335629631" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1009">
<div class="quarto-post image-right" data-index="16" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1749772800000" data-listing-file-modified-sort="1771939815305" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1009">
<div class="thumbnail"><a href="./suivi/2025-24/2025-24.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-24/figs/ari-clustering-desc&asc9.png" alt="9 réseaux - ARI pour le clustering avec modèles iid, procédure descendante et descendante&ascendante" class="thumbnail-image card-img"/></p>
@ -817,7 +851,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="16" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1748390400000" data-listing-file-modified-sort="1771335629630" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="785">
<div class="quarto-post image-right" data-index="17" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1748390400000" data-listing-file-modified-sort="1771939815305" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="785">
<div class="thumbnail"><a href="./suivi/2025-22/2025-22.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -852,7 +886,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="17" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1747958400000" data-listing-file-modified-sort="1771335629630" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="5" data-listing-word-count-sort="919">
<div class="quarto-post image-right" data-index="18" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1747958400000" data-listing-file-modified-sort="1771939815305" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="5" data-listing-word-count-sort="919">
<div class="thumbnail"><a href="./suivi/2025-21/2025-21.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -886,7 +920,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="18" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1747353600000" data-listing-file-modified-sort="1771335629630" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1030">
<div class="quarto-post image-right" data-index="19" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZSUyQ0dOTg==" data-listing-date-sort="1747353600000" data-listing-file-modified-sort="1771939815305" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="6" data-listing-word-count-sort="1030">
<div class="thumbnail"><a href="./suivi/2025-20/2025-20.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -920,7 +954,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="19" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZQ==" data-listing-date-sort="1746748800000" data-listing-file-modified-sort="1771335629630" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="5" data-listing-word-count-sort="814">
<div class="quarto-post image-right" data-index="20" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZQ==" data-listing-date-sort="1746748800000" data-listing-file-modified-sort="1771939815305" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="5" data-listing-word-count-sort="814">
<div class="thumbnail"><a href="./suivi/2025-19/2025-19.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -952,7 +986,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="20" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZQ==" data-listing-date-sort="1746144000000" data-listing-file-modified-sort="1771335629629" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="3" data-listing-word-count-sort="521">
<div class="quarto-post image-right" data-index="21" data-categories="Y29sQmlTQk0lMkNpbmYlQzMlQTlyZW5jZQ==" data-listing-date-sort="1746144000000" data-listing-file-modified-sort="1771939815304" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="3" data-listing-word-count-sort="521">
<div class="thumbnail"><a href="./suivi/2025-18/2025-18.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-18/figs/density-subdore.png" class="thumbnail-image card-img"/></p>
@ -984,7 +1018,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="21" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1745539200000" data-listing-file-modified-sort="1771335629620" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="4" data-listing-word-count-sort="714">
<div class="quarto-post image-right" data-index="22" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1745539200000" data-listing-file-modified-sort="1771939815295" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="4" data-listing-word-count-sort="714">
<div class="thumbnail"><a href="./suivi/2025-17/2025-17.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-17/figs/density-subdore.png" class="thumbnail-image card-img"/></p>
@ -1014,7 +1048,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="22" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1744934400000" data-listing-file-modified-sort="1771335629619" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="2" data-listing-word-count-sort="352">
<div class="quarto-post image-right" data-index="23" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1744934400000" data-listing-file-modified-sort="1771939815293" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="2" data-listing-word-count-sort="352">
<div class="thumbnail"><a href="./suivi/2025-16/2025-16.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -1044,7 +1078,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="23" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1743724800000" data-listing-file-modified-sort="1771335629617" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="2" data-listing-word-count-sort="353">
<div class="quarto-post image-right" data-index="24" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1743724800000" data-listing-file-modified-sort="1771939815292" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="2" data-listing-word-count-sort="353">
<div class="thumbnail"><a href="./suivi/2025-15/2025-15.html" class="no-external">
<p class="card-img-top"><img src="suivi/2025-15/figs/alluvial-clusterings.png" class="thumbnail-image card-img"/></p>
@ -1074,7 +1108,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="24" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1743120000000" data-listing-file-modified-sort="1771335629617" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="3" data-listing-word-count-sort="413">
<div class="quarto-post image-right" data-index="25" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1743120000000" data-listing-file-modified-sort="1771939815292" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="3" data-listing-word-count-sort="413">
<div class="thumbnail"><a href="./suivi/2025-14/2025-14.html" class="no-external">
<div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@ -1104,7 +1138,7 @@ Louis Lacoste
</a>
</div>
</div>
<div class="quarto-post image-right" data-index="25" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1742169600000" data-listing-file-modified-sort="1771335629612" data-listing-date-modified-sort="1771335629000" data-listing-reading-time-sort="3" data-listing-word-count-sort="426">
<div class="quarto-post image-right" data-index="26" data-categories="Y29sQmlTQk0=" data-listing-date-sort="1742169600000" data-listing-file-modified-sort="1771939815286" data-listing-date-modified-sort="1771939815000" data-listing-reading-time-sort="3" data-listing-word-count-sort="426">
<div class="thumbnail"><a href="./suivi/2025-13/2025-13.html" class="no-external">
<p class="card-img-top"><img data-src="suivi/2025-13/figs/baldock_meso_iid.png" alt="Baldock iid" class="thumbnail-image card-img"/></p>

1
listings.json
View file

@ -2,6 +2,7 @@
{
"listing": "/index.html",
"items": [
"/suivi/2026-9/2026-9.html",
"/suivi/2026-7/2026-7.html",
"/suivi/2026-8/2026-8.html",
"/suivi/2026-6/2026-6.html",

755
search.json
View file

File diff suppressed because one or more lines are too long

2
suivi/2025-13/2025-13.html
View file

@ -192,7 +192,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-14/2025-14.html
View file

@ -189,7 +189,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-15/2025-15.html
View file

@ -189,7 +189,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-16/2025-16.html
View file

@ -189,7 +189,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-17/2025-17.html
View file

@ -192,7 +192,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-18/2025-18.html
View file

@ -193,7 +193,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-19/2025-19.html
View file

@ -190,7 +190,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-20/2025-20.html
View file

@ -191,7 +191,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-21/2025-21.html
View file

@ -191,7 +191,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-22/2025-22.html
View file

@ -191,7 +191,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-24/2025-24.html
View file

@ -214,7 +214,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-25/2025-25.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-27/2025-27.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-29/2025-29.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-33/2025-33.html
View file

@ -214,7 +214,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-35/2025-35.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-38/2025-38.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-43/2025-43.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-44/2025-44.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-45/2025-45.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-50/2025-50.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2025-51/2025-51.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2026-6/2026-6.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2026-7/2026-7.html
View file

@ -213,7 +213,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

2
suivi/2026-8/2026-8.html
View file

@ -211,7 +211,7 @@ window.Quarto = {
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">17 février 2026</p>
<p class="date-modified">24 février 2026</p>
</div>
</div>

853
suivi/2026-9/2026-9.html Normal file
View file

@ -0,0 +1,853 @@
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="fr" xml:lang="fr"><head>
<meta charset="utf-8">
<meta name="generator" content="quarto-1.7.22">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<meta name="author" content="Louis Lacoste">
<title>Bilan semaine 9 2026 : 23 février - 27 février – Suivi de la thèse</title>
<style>
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
div.columns{display: flex; gap: min(4vw, 1.5em);}
div.column{flex: auto; overflow-x: auto;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
ul.task-list li input[type="checkbox"] {
width: 0.8em;
margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
vertical-align: middle;
}
/* CSS for citations */
div.csl-bib-body { }
div.csl-entry {
clear: both;
margin-bottom: 0em;
}
.hanging-indent div.csl-entry {
margin-left:2em;
text-indent:-2em;
}
div.csl-left-margin {
min-width:2em;
float:left;
}
div.csl-right-inline {
margin-left:2em;
padding-left:1em;
}
div.csl-indent {
margin-left: 2em;
}</style>
<script src="../../site_libs/quarto-nav/quarto-nav.js"></script>
<script src="../../site_libs/quarto-nav/headroom.min.js"></script>
<script src="../../site_libs/clipboard/clipboard.min.js"></script>
<script src="../../site_libs/quarto-search/autocomplete.umd.js"></script>
<script src="../../site_libs/quarto-search/fuse.min.js"></script>
<script src="../../site_libs/quarto-search/quarto-search.js"></script>
<meta name="quarto:offset" content="../../">
<script src="../../site_libs/quarto-html/quarto.js" type="module"></script>
<script src="../../site_libs/quarto-html/tabsets/tabsets.js" type="module"></script>
<script src="../../site_libs/quarto-html/popper.min.js"></script>
<script src="../../site_libs/quarto-html/tippy.umd.min.js"></script>
<script src="../../site_libs/quarto-html/anchor.min.js"></script>
<link href="../../site_libs/quarto-html/tippy.css" rel="stylesheet">
<link href="../../site_libs/quarto-html/quarto-syntax-highlighting-7b4406b7675125bc2ba204020e191172.css" rel="stylesheet" id="quarto-text-highlighting-styles">
<script src="../../site_libs/bootstrap/bootstrap.min.js"></script>
<link href="../../site_libs/bootstrap/bootstrap-icons.css" rel="stylesheet">
<link href="../../site_libs/bootstrap/bootstrap-c3e95e02e727cc1eb63534e29640e14d.min.css" rel="stylesheet" append-hash="true" id="quarto-bootstrap" data-mode="light">
<script id="quarto-search-options" type="application/json">{
"location": "navbar",
"copy-button": false,
"collapse-after": 3,
"panel-placement": "end",
"type": "overlay",
"limit": 50,
"keyboard-shortcut": [
"f",
"/",
"s"
],
"show-item-context": false,
"language": {
"search-no-results-text": "Pas de résultats",
"search-matching-documents-text": "documents trouvés",
"search-copy-link-title": "Copier le lien vers la recherche",
"search-hide-matches-text": "Cacher les correspondances additionnelles",
"search-more-match-text": "correspondance de plus dans ce document",
"search-more-matches-text": "correspondances de plus dans ce document",
"search-clear-button-title": "Effacer",
"search-text-placeholder": "",
"search-detached-cancel-button-title": "Annuler",
"search-submit-button-title": "Envoyer",
"search-label": "Recherche"
}
}</script>
<script>window.backupDefine = window.define; window.define = undefined;</script><script src="https://cdn.jsdelivr.net/npm/katex@latest/dist/katex.min.js"></script>
<script>document.addEventListener("DOMContentLoaded", function () {
var mathElements = document.getElementsByClassName("math");
var macros = [];
for (var i = 0; i < mathElements.length; i++) {
var texText = mathElements[i].firstChild;
if (mathElements[i].tagName == "SPAN") {
katex.render(texText.data, mathElements[i], {
displayMode: mathElements[i].classList.contains('display'),
throwOnError: false,
macros: macros,
fleqn: false
});
}}});
</script>
<script>window.define = window.backupDefine; window.backupDefine = undefined;</script><link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@latest/dist/katex.min.css">
<script type="text/javascript">
const typesetMath = (el) => {
if (window.MathJax) {
// MathJax Typeset
window.MathJax.typeset([el]);
} else if (window.katex) {
// KaTeX Render
var mathElements = el.getElementsByClassName("math");
var macros = [];
for (var i = 0; i < mathElements.length; i++) {
var texText = mathElements[i].firstChild;
if (mathElements[i].tagName == "SPAN") {
window.katex.render(texText.data, mathElements[i], {
displayMode: mathElements[i].classList.contains('display'),
throwOnError: false,
macros: macros,
fleqn: false
});
}
}
}
}
window.Quarto = {
typesetMath
};
</script>
</head>
<body class="nav-fixed quarto-light">
<div id="quarto-search-results"></div>
<header id="quarto-header" class="headroom fixed-top quarto-banner">
<nav class="navbar navbar-expand-lg " data-bs-theme="dark">
<div class="navbar-container container-fluid">
<div class="navbar-brand-container mx-auto">
<a class="navbar-brand" href="../../index.html">
<span class="navbar-title">Suivi de la thèse</span>
</a>
</div>
<div id="quarto-search" class="" title="Recherche"></div>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarCollapse" aria-controls="navbarCollapse" role="menu" aria-expanded="false" aria-label="Basculer la navigation" onclick="if (window.quartoToggleHeadroom) { window.quartoToggleHeadroom(); }">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarCollapse">
<ul class="navbar-nav navbar-nav-scroll me-auto">
<li class="nav-item">
<a class="nav-link" href="../../index.html"> <i class="bi bi-journals" role="img">
</i>
<span class="menu-text">Liste des semaines</span></a>
</li>
</ul>
<ul class="navbar-nav navbar-nav-scroll ms-auto">
<li class="nav-item compact">
<a class="nav-link" href="https://git.polarolouis.fr/polarolouis/these-recap-hebdo"> <i class="bi bi-git" role="img" aria-label="Dépôt Git du journal">
</i>
<span class="menu-text"></span></a>
</li>
</ul>
</div> <!-- /navcollapse -->
<div class="quarto-navbar-tools">
</div>
</div> <!-- /container-fluid -->
</nav>
</header>
<!-- content -->
<header id="title-block-header" class="quarto-title-block default page-columns page-full">
<div class="quarto-title-banner page-columns page-full">
<div class="quarto-title column-body">
<h1 class="title">Bilan semaine 9 2026 : 23 février - 27 février</h1>
<div class="quarto-categories">
<div class="quarto-category">colBiSBM</div>
<div class="quarto-category">inférence</div>
<div class="quarto-category">GNN</div>
</div>
</div>
</div>
<div class="quarto-title-meta-author">
<div class="quarto-title-meta-heading">Auteur·rice</div>
<div class="quarto-title-meta-heading">Affiliation</div>
<div class="quarto-title-meta-contents">
<p class="author">Louis Lacoste <a href="mailto:louis.lacoste@agroparistech.fr" class="quarto-title-author-email"><i class="bi bi-envelope"></i></a> <a href="https://orcid.org/0009-0004-0178-9821" class="quarto-title-author-orcid"> <img src="data:image/png;base64,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"></a></p>
</div>
<div class="quarto-title-meta-contents">
<p class="affiliation">
MIA Paris-Saclay, INRAE, AgroParisTech, Université Paris-Saclay
</p>
</div>
</div>
<div class="quarto-title-meta">
<div>
<div class="quarto-title-meta-heading">Date de publication</div>
<div class="quarto-title-meta-contents">
<p class="date">23 février 2026</p>
</div>
</div>
<div>
<div class="quarto-title-meta-heading">Modifié</div>
<div class="quarto-title-meta-contents">
<p class="date-modified">24 février 2026</p>
</div>
</div>
</div>
</header><div id="quarto-content" class="quarto-container page-columns page-rows-contents page-layout-article page-navbar">
<!-- sidebar -->
<!-- margin-sidebar -->
<div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
<nav id="TOC" role="doc-toc" class="toc-active">
<h2 id="toc-title">Sur cette page</h2>
<ul>
<li><a href="#todo-list" id="toc-todo-list" class="nav-link active" data-scroll-target="#todo-list">TODO List</a>
<ul class="collapse">
<li><a href="#inférence-et-microbes" id="toc-inférence-et-microbes" class="nav-link" data-scroll-target="#inférence-et-microbes">Inférence et microbes</a></li>
</ul></li>
<li><a href="#a-discuter" id="toc-a-discuter" class="nav-link" data-scroll-target="#a-discuter">A discuter</a></li>
<li><a href="#biblio-à-faire" id="toc-biblio-à-faire" class="nav-link" data-scroll-target="#biblio-à-faire">Biblio à faire</a></li>
<li><a href="#lectures-en-cours" id="toc-lectures-en-cours" class="nav-link" data-scroll-target="#lectures-en-cours">Lectures en cours 📚</a>
<ul class="collapse">
<li><a href="#hdr-vincent-brault" id="toc-hdr-vincent-brault" class="nav-link" data-scroll-target="#hdr-vincent-brault">HDR Vincent Brault</a></li>
<li><a href="#ot" id="toc-ot" class="nav-link" data-scroll-target="#ot">OT</a></li>
<li><a href="#inférence-de-graphes" id="toc-inférence-de-graphes" class="nav-link" data-scroll-target="#inférence-de-graphes">Inférence de graphes</a></li>
<li><a href="#causalité-1" id="toc-causalité-1" class="nav-link" data-scroll-target="#causalité-1">Causalité</a></li>
<li><a href="#largest-gaps" id="toc-largest-gaps" class="nav-link" data-scroll-target="#largest-gaps">Largest Gaps</a></li>
</ul></li>
</ul>
</nav>
</div>
<!-- main -->
<main class="content quarto-banner-title-block" id="quarto-document-content">
<section id="todo-list" class="level2">
<h2 class="anchored" data-anchor-id="todo-list">TODO List</h2>
<ul>
<li>Petites opérations sur les OTUs (regarder la matrice dans les yeux):
<ul>
<li>Ranger les OTUs par variances (i.e.&nbsp;<code>sd(OTU_j)</code>)
<ul>
<li>HMC sur-dispersés (au-dessus bissectrice)</li>
<li>Enterotype phyloseq sous-disp</li>
</ul></li>
<li>Regarder la proportion de 1. taxon rares, 2. zeros.</li>
<li>Faire des coupures selon niveaux taxonomiques et regarder si <span class="math inline">\mathbb{V}_{\text{intra}} \approx \mathbb{V}_{\text{inter}}</span></li>
<li><em>Bonus</em>: faire ça dans qmd et voir si forge permet gitlab pages</li>
</ul></li>
<li>✅ Avec blockmodels, codé un LBM-Séquentiel. <em>Des différences contrastées…</em>
<ul>
<li>TODO Ajouter lien vers notebooks résultats</li>
</ul></li>
<li>Relire <span class="citation" data-cites="peixotoHierarchicalBlockStructures2014">Peixoto (<a href="#ref-peixotoHierarchicalBlockStructures2014" role="doc-biblioref">2014</a>)</span>
<ul>
<li>Regarder les gens qui citent les travaux de Peixoto</li>
<li>Utiliser graphtools en initialisant la recherche Nested avec le partitionnement donné par l’arbre phylogénétique.</li>
</ul></li>
<li>⌛ <strong>En cours</strong> Implémentation <code>blockmodels</code> LBM avec covariables sur proportions (voir <strong>?@eq-modele-covar-prop</strong>)</li>
</ul>
<div class="callout callout-style-default callout-note callout-titled" title="Idées">
<div class="callout-header d-flex align-content-center">
<div class="callout-icon-container">
<i class="callout-icon"></i>
</div>
<div class="callout-title-container flex-fill">
Idées
</div>
</div>
<div class="callout-body-container callout-body">
<ul>
<li>Trouver manière de faire un compromis : <span class="math inline">\ell(Y,Z,W;\theta) - \lambda d(C(W),C_0)</span> avec <span class="math inline">C(W)</span> le clustering seulement sur la base de la structure LBM et <span class="math inline">C_0</span> le clustering de l’arbre. Problème <span class="math inline">d</span> est une distance entre partition, comment optimiser dessus ?</li>
<li>⌛ Mise à jour partielle des <span class="math inline">\tau</span> : ce qui pose soucis c’est les gros calculs matriciels (c’est vraiment vrai?). Donc sorte de “stochastic” VEM où on update seulement une partie des <span class="math inline">\tau</span> à chaque itération. Et échantillonnage stratifié selon l’arbre ?
<ul>
<li>⌛ Simulations avec <span class="math inline">n_2</span> croissant lancée sur Migale</li>
<li>Réimplementé VE Bernoulli dans colSBM pour Bipartite et début implémentation Stochastic VE. En fait le problème des calculs matriciels <span class="math inline">Y\times(\tau^{(1)})^{\top}</span> (<span class="math inline">n_2^2</span>) donc besoin de sous-échantillonner les noeuds de l’autre dimension à mettre à jour.</li>
</ul></li>
</ul>
</div>
</div>
<ul>
<li><p>Clustering unipartite j’ai cassé une fonction de distance à vérifier et réparer</p></li>
<li><p>Codes pour le papier :</p>
<ul>
<li>Nettoyer les scripts</li>
<li>Faire un joli README</li>
<li>❓Faire des notebooks</li>
</ul></li>
<li><p>Réussir à reproduire résultat de <span class="citation" data-cites="abramovStructureKnowsBest">Abramov et al. (<a href="#ref-abramovStructureKnowsBest" role="doc-biblioref">s.&nbsp;d.</a>)</span></p></li>
<li><p>Maitriser graphtools de Peixoto pour essayer d’utiliser l’arbre taxonomique sur graphe de cooccurence inférer par SparCC</p></li>
<li><p>Maitriser SparCC</p></li>
<li><p>👶 (délégué à Mona) Clustering sur Doré :</p>
<ul>
<li>Ajouter Chao1 et 2, colonne par colonne (site par site), et faire indice moyen et la variance.</li>
</ul></li>
</ul>
<section id="inférence-et-microbes" class="level3">
<h3 class="anchored" data-anchor-id="inférence-et-microbes">Inférence et microbes</h3>
<ul>
<li>⌛ (En cours) Possible en modifiant lbm.h et sbm.h d’obtenir un modèle utilisant les covariables de groupes (de blocs ?). Car besoin de changer <code>membership.m_step()</code> pour mettre à jour <span class="math inline">\pmb\pi</span> et <span class="math inline">\pmb{\rho}</span> en utilisant les <span class="math inline">\pmb B^{\top}\pmb X</span> et en renvoyant l’ELBO adaptée.
<ul>
<li><p>😄 Avantage s’inscrit directement dans blockmodels et permet d’avoir toutes les lois d’émissions déjà codées et compatibles !</p></li>
<li><p>😢 Besoin de réfléchir a une bonne implémentation.</p></li>
</ul></li>
</ul>
<p>J’ai codé l’optimisation et les transferts mais il faut que je vérifie que tout fonctionne</p>
<ul>
<li>✅ Appliqué multipartite sur <span class="math inline">\forall i, OTU_i \times Sample</span>: <img src="figs/Multipartite.svg" class="img-fluid" alt="Le plot des groupes trouvés par le multipartite (2 pour tous les OTUs et 4 pour les échantillons.)"></li>
</ul>
<section id="bibliographie-à-lire-à-faire" class="level4">
<h4 class="anchored" data-anchor-id="bibliographie-à-lire-à-faire">Bibliographie: à lire, à faire</h4>
<ul>
<li>Lire article multi-niveaux Saint-Clair</li>
<li>🆕 🔎 Trouver des papiers:
<ul>
<li>LBM Negative Binomial</li>
<li>Network inference through sample comparison</li>
</ul></li>
<li>Idée des groupes sur la base de distance phylogénétique:
<ul>
<li>En train de comprendre les distances que phyloseq permet de calculer sur notre exemple</li>
<li>En train de lire sur Principle coordinate analysis : https://openplantpathology.github.io/OPP_Workshop_Multivariate/2-MV_PCO.html</li>
<li>Parametric t-SNE pour avoir une unique représentation latente (inconvénient utilise du Deep Learning)</li>
<li>Lire Papier UniFrac</li>
</ul></li>
</ul>
</section>
<section id="écrire-et-faire-tourner" class="level4">
<h4 class="anchored" data-anchor-id="écrire-et-faire-tourner">Écrire et faire tourner</h4>
<ul>
<li>🆕 SparCC à différent niveaux</li>
<li>🆕⌛ Tree-PLN à différents niveaux</li>
</ul>
</section>
<section id="causalité" class="level4">
<h4 class="anchored" data-anchor-id="causalité">Causalité</h4>
<p>Plus sur le temps long, à regarder</p>
<ul>
<li>GT causalité</li>
<li>Daria Bystrova lire présentation <span class="citation" data-cites="bystrovaCausalDiscovery">Bystrova (<a href="#ref-bystrovaCausalDiscovery" role="doc-biblioref">s.&nbsp;d.</a>)</span> (Meek rules, V-structure)</li>
</ul>
</section>
</section>
</section>
<section id="a-discuter" class="level2">
<h2 class="anchored" data-anchor-id="a-discuter">A discuter</h2>
<ul>
<li>🆕 Voir pour des Réseaux / GDR ou aller</li>
<li>🆕 Chercher des cours à suivre</li>
</ul>
</section>
<section id="biblio-à-faire" class="level2">
<h2 class="anchored" data-anchor-id="biblio-à-faire">Biblio à faire</h2>
<ul>
<li>Regarder Transport optimal graphes bipartite.</li>
</ul>
</section>
<section id="lectures-en-cours" class="level2">
<h2 class="anchored" data-anchor-id="lectures-en-cours">Lectures en cours 📚</h2>
<section id="hdr-vincent-brault" class="level3">
<h3 class="anchored" data-anchor-id="hdr-vincent-brault">HDR Vincent Brault</h3>
<ul>
<li>⌛ Chap 2 : Creuser l’idée de maximiser l’énergie libre, très intéressant regarder le critère CARI et lire Robert et al 2021. Actuellement p32 du manuscrit</li>
<li>Chap 3</li>
</ul>
</section>
<section id="ot" class="level3">
<h3 class="anchored" data-anchor-id="ot">OT</h3>
<ul>
<li>⌛ <span class="citation" data-cites="mazeletUnsupervisedLearningOptimal">Mazelet, Flamary, et Thirion (<a href="#ref-mazeletUnsupervisedLearningOptimal" role="doc-biblioref">s.&nbsp;d.</a>)</span> Intéressant pour le transport optimal entre graphes de tailles différentes | Regarder si regularization entropique ne marche pas bien pour le graphe.</li>
<li>⌛ <span class="citation" data-cites="nennaLecture2Entropic">Nenna (<a href="#ref-nennaLecture2Entropic" role="doc-biblioref">s.&nbsp;d.b</a>)</span> Pour comprendre le problème d’OT régularisé pour l’entropie.</li>
<li>⌛ <span class="citation" data-cites="nennaLecture1Monge">Nenna (<a href="#ref-nennaLecture1Monge" role="doc-biblioref">s.&nbsp;d.a</a>)</span></li>
</ul>
</section>
<section id="inférence-de-graphes" class="level3">
<h3 class="anchored" data-anchor-id="inférence-de-graphes">Inférence de graphes</h3>
<ul>
<li><p>⌛ <span class="citation" data-cites="aitchisonStatisticalAnalysisCompositional1982a">Aitchison (<a href="#ref-aitchisonStatisticalAnalysisCompositional1982a" role="doc-biblioref">1982</a>)</span>, en cours</p></li>
<li><p>❗📖 <span class="citation" data-cites="payneFiniteMixturesMultivariate2023">Payne et al. (<a href="#ref-payneFiniteMixturesMultivariate2023" role="doc-biblioref">2023</a>)</span> sur MixMPLN</p></li>
</ul>
</section>
<section id="causalité-1" class="level3">
<h3 class="anchored" data-anchor-id="causalité-1">Causalité</h3>
<ul>
<li>❗📖 <span class="citation" data-cites="bystrovaCausalDiscovery">Bystrova (<a href="#ref-bystrovaCausalDiscovery" role="doc-biblioref">s.&nbsp;d.</a>)</span></li>
</ul>
</section>
<section id="largest-gaps" class="level3">
<h3 class="anchored" data-anchor-id="largest-gaps">Largest Gaps</h3>
<ul>
<li>❗📖 <span class="citation" data-cites="braultFastConsistentAlgorithm2023">Brault et Channarond (<a href="#ref-braultFastConsistentAlgorithm2023" role="doc-biblioref">2023</a>)</span></li>
<li>❗📖 <span class="citation" data-cites="channarondClassificationEstimationStochastic2012">Channarond, Daudin, et Robin (<a href="#ref-channarondClassificationEstimationStochastic2012" role="doc-biblioref">2012</a>)</span> le papier qui introduit le <em>Largest Gaps</em></li>
</ul>
</section>
</section>
<div id="quarto-appendix" class="default"><section class="quarto-appendix-contents" role="doc-bibliography" id="quarto-bibliography"><h2 class="anchored quarto-appendix-heading">Les références</h2><div id="refs" class="references csl-bib-body hanging-indent" data-entry-spacing="0" role="list">
<div id="ref-abramovStructureKnowsBest" class="csl-entry" role="listitem">
Abramov, Kesem, Barry Biton, Geut Galai, Rami Puzis, et Shai Pilosof. s.&nbsp;d. <span>«&nbsp;Structure Knows Best: Predicting Ecological Interactions Across Space Through Pairwise Integration of Latent Network Patterns&nbsp;»</span>.
</div>
<div id="ref-aitchisonStatisticalAnalysisCompositional1982a" class="csl-entry" role="listitem">
Aitchison, J. 1982. <span>«&nbsp;The <span>Statistical Analysis</span> of <span>Compositional Data</span>&nbsp;»</span>. <em>Journal of the Royal Statistical Society. Series B (Methodological)</em> 44 (2): 139‑77. <a href="https://www.jstor.org/stable/2345821">https://www.jstor.org/stable/2345821</a>.
</div>
<div id="ref-braultFastConsistentAlgorithm2023" class="csl-entry" role="listitem">
Brault, Vincent, et Antoine Channarond. 2023. <span>«&nbsp;Fast and <span>Consistent Algorithm</span> for the <span>Latent Block Model</span>&nbsp;»</span>. 9 mars 2023. <a href="https://doi.org/10.48550/arXiv.1610.09005">https://doi.org/10.48550/arXiv.1610.09005</a>.
</div>
<div id="ref-bystrovaCausalDiscovery" class="csl-entry" role="listitem">
Bystrova, Daria. s.&nbsp;d. <span>«&nbsp;Causal Discovery&nbsp;»</span>.
</div>
<div id="ref-channarondClassificationEstimationStochastic2012" class="csl-entry" role="listitem">
Channarond, Antoine, Jean-Jacques Daudin, et Stéphane Robin. 2012. <span>«&nbsp;Classification and Estimation in the <span>Stochastic Blockmodel</span> Based on the Empirical Degrees&nbsp;»</span>. <em>Electronic Journal of Statistics</em> 6 (janvier). <a href="https://doi.org/10.1214/12-ejs753">https://doi.org/10.1214/12-ejs753</a>.
</div>
<div id="ref-mazeletUnsupervisedLearningOptimal" class="csl-entry" role="listitem">
Mazelet, Sonia, Rémi Flamary, et Bertrand Thirion. s.&nbsp;d. <span>«&nbsp;Unsupervised <span>Learning</span> for <span>Optimal Transport</span> Plan Prediction Between Unbalanced Graphs&nbsp;»</span>.
</div>
<div id="ref-nennaLecture1Monge" class="csl-entry" role="listitem">
Nenna, Luca. s.&nbsp;d.a. <span>«&nbsp;Lecture 1 <span>Monge</span> and <span>Kantorovich</span> Problems: From Primal to Dual&nbsp;»</span>.
</div>
<div id="ref-nennaLecture2Entropic" class="csl-entry" role="listitem">
———. s.&nbsp;d.b. <span>«&nbsp;Lecture 2: <span>Entropic Optimal Transport</span>&nbsp;»</span>.
</div>
<div id="ref-payneFiniteMixturesMultivariate2023" class="csl-entry" role="listitem">
Payne, Andrea, Anjali Silva, Steven J. Rothstein, Paul D. McNicholas, et Sanjeena Subedi. 2023. <span>«&nbsp;Finite <span>Mixtures</span> of <span>Multivariate Poisson-Log Normal Factor Analyzers</span> for <span>Clustering Count Data</span>&nbsp;»</span>. 13 novembre 2023. <a href="https://doi.org/10.48550/arXiv.2311.07762">https://doi.org/10.48550/arXiv.2311.07762</a>.
</div>
<div id="ref-peixotoHierarchicalBlockStructures2014" class="csl-entry" role="listitem">
Peixoto, Tiago P. 2014. <span>«&nbsp;Hierarchical <span>Block Structures</span> and <span>High-Resolution Model Selection</span> in <span>Large Networks</span>&nbsp;»</span>. <em>Physical Review X</em> 4 (1): 011047. <a href="https://doi.org/10.1103/PhysRevX.4.011047">https://doi.org/10.1103/PhysRevX.4.011047</a>.
</div>
</div></section></div></main> <!-- /main -->
<script id="quarto-html-after-body" type="application/javascript">
window.document.addEventListener("DOMContentLoaded", function (event) {
const icon = "";
const anchorJS = new window.AnchorJS();
anchorJS.options = {
placement: 'right',
icon: icon
};
anchorJS.add('.anchored');
const isCodeAnnotation = (el) => {
for (const clz of el.classList) {
if (clz.startsWith('code-annotation-')) {
return true;
}
}
return false;
}
const onCopySuccess = function(e) {
// button target
const button = e.trigger;
// don't keep focus
button.blur();
// flash "checked"
button.classList.add('code-copy-button-checked');
var currentTitle = button.getAttribute("title");
button.setAttribute("title", "Copié");
let tooltip;
if (window.bootstrap) {
button.setAttribute("data-bs-toggle", "tooltip");
button.setAttribute("data-bs-placement", "left");
button.setAttribute("data-bs-title", "Copié");
tooltip = new bootstrap.Tooltip(button,
{ trigger: "manual",
customClass: "code-copy-button-tooltip",
offset: [0, -8]});
tooltip.show();
}
setTimeout(function() {
if (tooltip) {
tooltip.hide();
button.removeAttribute("data-bs-title");
button.removeAttribute("data-bs-toggle");
button.removeAttribute("data-bs-placement");
}
button.setAttribute("title", currentTitle);
button.classList.remove('code-copy-button-checked');
}, 1000);
// clear code selection
e.clearSelection();
}
const getTextToCopy = function(trigger) {
const codeEl = trigger.previousElementSibling.cloneNode(true);
for (const childEl of codeEl.children) {
if (isCodeAnnotation(childEl)) {
childEl.remove();
}
}
return codeEl.innerText;
}
const clipboard = new window.ClipboardJS('.code-copy-button:not([data-in-quarto-modal])', {
text: getTextToCopy
});
clipboard.on('success', onCopySuccess);
if (window.document.getElementById('quarto-embedded-source-code-modal')) {
const clipboardModal = new window.ClipboardJS('.code-copy-button[data-in-quarto-modal]', {
text: getTextToCopy,
container: window.document.getElementById('quarto-embedded-source-code-modal')
});
clipboardModal.on('success', onCopySuccess);
}
var localhostRegex = new RegExp(/^(?:http|https):\/\/localhost\:?[0-9]*\//);
var mailtoRegex = new RegExp(/^mailto:/);
var filterRegex = new RegExp('/' + window.location.host + '/');
var isInternal = (href) => {
return filterRegex.test(href) || localhostRegex.test(href) || mailtoRegex.test(href);
}
// Inspect non-navigation links and adorn them if external
var links = window.document.querySelectorAll('a[href]:not(.nav-link):not(.navbar-brand):not(.toc-action):not(.sidebar-link):not(.sidebar-item-toggle):not(.pagination-link):not(.no-external):not([aria-hidden]):not(.dropdown-item):not(.quarto-navigation-tool):not(.about-link)');
for (var i=0; i<links.length; i++) {
const link = links[i];
if (!isInternal(link.href)) {
// undo the damage that might have been done by quarto-nav.js in the case of
// links that we want to consider external
if (link.dataset.originalHref !== undefined) {
link.href = link.dataset.originalHref;
}
}
}
function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
const config = {
allowHTML: true,
maxWidth: 500,
delay: 100,
arrow: false,
appendTo: function(el) {
return el.parentElement;
},
interactive: true,
interactiveBorder: 10,
theme: 'quarto',
placement: 'bottom-start',
};
if (contentFn) {
config.content = contentFn;
}
if (onTriggerFn) {
config.onTrigger = onTriggerFn;
}
if (onUntriggerFn) {
config.onUntrigger = onUntriggerFn;
}
window.tippy(el, config);
}
const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
for (var i=0; i<noterefs.length; i++) {
const ref = noterefs[i];
tippyHover(ref, function() {
// use id or data attribute instead here
let href = ref.getAttribute('data-footnote-href') || ref.getAttribute('href');
try { href = new URL(href).hash; } catch {}
const id = href.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note) {
return note.innerHTML;
} else {
return "";
}
});
}
const xrefs = window.document.querySelectorAll('a.quarto-xref');
const processXRef = (id, note) => {
// Strip column container classes
const stripColumnClz = (el) => {
el.classList.remove("page-full", "page-columns");
if (el.children) {
for (const child of el.children) {
stripColumnClz(child);
}
}
}
stripColumnClz(note)
if (id === null || id.startsWith('sec-')) {
// Special case sections, only their first couple elements
const container = document.createElement("div");
if (note.children && note.children.length > 2) {
container.appendChild(note.children[0].cloneNode(true));
for (let i = 1; i < note.children.length; i++) {
const child = note.children[i];
if (child.tagName === "P" && child.innerText === "") {
continue;
} else {
container.appendChild(child.cloneNode(true));
break;
}
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(container);
}
return container.innerHTML
} else {
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
return note.innerHTML;
}
} else {
// Remove any anchor links if they are present
const anchorLink = note.querySelector('a.anchorjs-link');
if (anchorLink) {
anchorLink.remove();
}
if (window.Quarto?.typesetMath) {
window.Quarto.typesetMath(note);
}
if (note.classList.contains("callout")) {
return note.outerHTML;
} else {
return note.innerHTML;
}
}
}
for (var i=0; i<xrefs.length; i++) {
const xref = xrefs[i];
tippyHover(xref, undefined, function(instance) {
instance.disable();
let url = xref.getAttribute('href');
let hash = undefined;
if (url.startsWith('#')) {
hash = url;
} else {
try { hash = new URL(url).hash; } catch {}
}
if (hash) {
const id = hash.replace(/^#\/?/, "");
const note = window.document.getElementById(id);
if (note !== null) {
try {
const html = processXRef(id, note.cloneNode(true));
instance.setContent(html);
} finally {
instance.enable();
instance.show();
}
} else {
// See if we can fetch this
fetch(url.split('#')[0])
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.getElementById(id);
if (note !== null) {
const html = processXRef(id, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
} else {
// See if we can fetch a full url (with no hash to target)
// This is a special case and we should probably do some content thinning / targeting
fetch(url)
.then(res => res.text())
.then(html => {
const parser = new DOMParser();
const htmlDoc = parser.parseFromString(html, "text/html");
const note = htmlDoc.querySelector('main.content');
if (note !== null) {
// This should only happen for chapter cross references
// (since there is no id in the URL)
// remove the first header
if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
note.children[0].remove();
}
const html = processXRef(null, note);
instance.setContent(html);
}
}).finally(() => {
instance.enable();
instance.show();
});
}
}, function(instance) {
});
}
let selectedAnnoteEl;
const selectorForAnnotation = ( cell, annotation) => {
let cellAttr = 'data-code-cell="' + cell + '"';
let lineAttr = 'data-code-annotation="' + annotation + '"';
const selector = 'span[' + cellAttr + '][' + lineAttr + ']';
return selector;
}
const selectCodeLines = (annoteEl) => {
const doc = window.document;
const targetCell = annoteEl.getAttribute("data-target-cell");
const targetAnnotation = annoteEl.getAttribute("data-target-annotation");
const annoteSpan = window.document.querySelector(selectorForAnnotation(targetCell, targetAnnotation));
const lines = annoteSpan.getAttribute("data-code-lines").split(",");
const lineIds = lines.map((line) => {
return targetCell + "-" + line;
})
let top = null;
let height = null;
let parent = null;
if (lineIds.length > 0) {
//compute the position of the single el (top and bottom and make a div)
const el = window.document.getElementById(lineIds[0]);
top = el.offsetTop;
height = el.offsetHeight;
parent = el.parentElement.parentElement;
if (lineIds.length > 1) {
const lastEl = window.document.getElementById(lineIds[lineIds.length - 1]);
const bottom = lastEl.offsetTop + lastEl.offsetHeight;
height = bottom - top;
}
if (top !== null && height !== null && parent !== null) {
// cook up a div (if necessary) and position it
let div = window.document.getElementById("code-annotation-line-highlight");
if (div === null) {
div = window.document.createElement("div");
div.setAttribute("id", "code-annotation-line-highlight");
div.style.position = 'absolute';
parent.appendChild(div);
}
div.style.top = top - 2 + "px";
div.style.height = height + 4 + "px";
div.style.left = 0;
let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
if (gutterDiv === null) {
gutterDiv = window.document.createElement("div");
gutterDiv.setAttribute("id", "code-annotation-line-highlight-gutter");
gutterDiv.style.position = 'absolute';
const codeCell = window.document.getElementById(targetCell);
const gutter = codeCell.querySelector('.code-annotation-gutter');
gutter.appendChild(gutterDiv);
}
gutterDiv.style.top = top - 2 + "px";
gutterDiv.style.height = height + 4 + "px";
}
selectedAnnoteEl = annoteEl;
}
};
const unselectCodeLines = () => {
const elementsIds = ["code-annotation-line-highlight", "code-annotation-line-highlight-gutter"];
elementsIds.forEach((elId) => {
const div = window.document.getElementById(elId);
if (div) {
div.remove();
}
});
selectedAnnoteEl = undefined;
};
// Handle positioning of the toggle
window.addEventListener(
"resize",
throttle(() => {
elRect = undefined;
if (selectedAnnoteEl) {
selectCodeLines(selectedAnnoteEl);
}
}, 10)
);
function throttle(fn, ms) {
let throttle = false;
let timer;
return (...args) => {
if(!throttle) { // first call gets through
fn.apply(this, args);
throttle = true;
} else { // all the others get throttled
if(timer) clearTimeout(timer); // cancel #2
timer = setTimeout(() => {
fn.apply(this, args);
timer = throttle = false;
}, ms);
}
};
}
// Attach click handler to the DT
const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
for (const annoteDlNode of annoteDls) {
annoteDlNode.addEventListener('click', (event) => {
const clickedEl = event.target;
if (clickedEl !== selectedAnnoteEl) {
unselectCodeLines();
const activeEl = window.document.querySelector('dt[data-target-cell].code-annotation-active');
if (activeEl) {
activeEl.classList.remove('code-annotation-active');
}
selectCodeLines(clickedEl);
clickedEl.classList.add('code-annotation-active');
} else {
// Unselect the line
unselectCodeLines();
clickedEl.classList.remove('code-annotation-active');
}
});
}
const findCites = (el) => {
const parentEl = el.parentElement;
if (parentEl) {
const cites = parentEl.dataset.cites;
if (cites) {
return {
el,
cites: cites.split(' ')
};
} else {
return findCites(el.parentElement)
}
} else {
return undefined;
}
};
var bibliorefs = window.document.querySelectorAll('a[role="doc-biblioref"]');
for (var i=0; i<bibliorefs.length; i++) {
const ref = bibliorefs[i];
const citeInfo = findCites(ref);
if (citeInfo) {
tippyHover(citeInfo.el, function() {
var popup = window.document.createElement('div');
citeInfo.cites.forEach(function(cite) {
var citeDiv = window.document.createElement('div');
citeDiv.classList.add('hanging-indent');
citeDiv.classList.add('csl-entry');
var biblioDiv = window.document.getElementById('ref-' + cite);
if (biblioDiv) {
citeDiv.innerHTML = biblioDiv.innerHTML;
}
popup.appendChild(citeDiv);
});
return popup.innerHTML;
});
}
}
});
</script>
</div> <!-- /content -->
</body></html>

50783
suivi/2026-9/figs/Multipartite.svg Normal file
View file

File diff suppressed because it is too large Load diff
Side by side

After

Width:  |  Height:  |  Size: 7.5 MiB