Paul Bastide
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f3bb5bba45
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Try using REML on chen simu data.
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2024-02-13 16:17:57 +01:00 |
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e922c98836
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✨Applied our methods to data and adjusted pvalues
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2024-02-11 19:22:31 +01:00 |
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846f3316ea
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📝Correcting missing tree parameter
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2024-02-11 19:22:08 +01:00 |
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e4668fc341
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Saving work on anovaComparison
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2024-02-11 18:39:22 +01:00 |
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0cad78d968
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📝Extract pvalue computations
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2024-02-11 18:30:32 +01:00 |
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b4384acc39
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Adding realTree simulations
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2024-02-10 18:35:58 +01:00 |
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9b4c5f7a86
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Moving simulation functions in utils and adapting it for more than two groups
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2024-02-10 18:20:45 +01:00 |
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a7aee4f382
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Begin working on real tree data
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2024-02-10 15:41:42 +01:00 |
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e1b9cfea28
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Cosmetic
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2024-02-10 15:41:31 +01:00 |
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00d4f979f8
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✨Extracting nb_species and K number of groups from model fit
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2024-02-07 11:43:50 +01:00 |
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aa13972a3d
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Adding what to do in realTreeMethod
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2024-02-06 18:48:32 +01:00 |
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d7386b1096
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Adding comments for todo
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2024-02-06 18:48:04 +01:00 |
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bdd464f754
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Activated REML
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2024-02-06 18:46:24 +01:00 |
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e438eb2223
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Changing round digits and adding images
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2024-02-03 17:03:40 +01:00 |
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2a38800f4c
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Removing old plot and extracting functions
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2024-02-03 16:57:52 +01:00 |
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5251d1cb7e
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✨Removing old code, adding new plot function and renaming
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2024-02-03 16:39:25 +01:00 |
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aab36a16d0
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Merge branch 'main' of github.com:Polarolouis/anova-phylogenetique-projet-msv
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2024-02-03 14:06:39 +01:00 |
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cfd7346c00
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Modif anovaComparison
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2024-02-03 14:03:49 +01:00 |
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13f0d1ccd6
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Ajout de vrai données pour la simulation
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2024-02-03 14:03:20 +01:00 |
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16f512c53b
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✨Implemented function to simulate dataset and first PoC
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2024-01-24 12:15:46 +01:00 |
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84c51a45b9
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✨Added a test_selected_correctly function
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2024-01-24 12:15:02 +01:00 |
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820716a4cd
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🐛 Fixing forgotten tree argument in lrt
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2024-01-24 11:17:24 +01:00 |
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76aac40c51
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🖍️ Removing old code to replace it
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2024-01-24 11:06:08 +01:00 |
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73448ad446
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🐛Fixing forgotten F test for pvalues, missing measurement error
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2024-01-24 11:03:37 +01:00 |
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39df26a712
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🖍️Moving functions to utils
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2024-01-24 10:49:07 +01:00 |
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70bdebfeb9
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🖍️Refactoring the code
✨Began the implementation of the inference and simulation SEPARATED methods
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2024-01-23 23:02:19 +01:00 |
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bf8cfce2ea
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✨ Beginning to add degrees of freedom to dataframe and adding TODOs objectives
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2024-01-23 18:54:45 +01:00 |
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f8e38ed979
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Fixing error
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2024-01-23 18:53:31 +01:00 |
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d036f5c64d
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📊Adding new data
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2024-01-23 18:52:51 +01:00 |
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3908729ac2
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🐛Fixing bugs that lead to incorrect type I error evaluation
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2024-01-23 18:52:08 +01:00 |
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37e41bb2fc
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✨ Added heritability parameters according to Paul's code
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2024-01-22 20:08:17 +01:00 |
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d6fec44a1e
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✨Adding hline for risk_threshold
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2024-01-22 19:40:45 +01:00 |
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48dbc3e37d
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✨ Implementing method comparison
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2024-01-22 19:12:10 +01:00 |
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bda79d4195
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🧹 Reformating and renaming
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2024-01-22 19:11:22 +01:00 |
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245137fc97
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✨ Adding missing functions for Satterthwaite ddf implementation
🐛 Handling sigma2_measure = 0 case for ddf computation
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2024-01-22 19:09:27 +01:00 |
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b2212c5ef8
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🐛 : Adding missing compute_hessian
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2024-01-22 17:39:17 +01:00 |
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ea98e5c878
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Adding Paul's Satterthwaite approximation to utils.R
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2024-01-22 17:35:03 +01:00 |
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98b5696110
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✨ Adding Paul's contribution
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2024-01-22 17:17:38 +01:00 |
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8ad59a13e6
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Added the possibility to choose Hypothesis
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2024-01-16 16:25:38 +01:00 |
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2f5d5a224e
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Adding the pvalue computation for likelihood ratio
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2024-01-16 15:33:22 +01:00 |
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fe02088233
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Finished reimplementing properly
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2024-01-15 17:44:23 +01:00 |
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6e80eff1a4
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Began reimplementing properly
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2024-01-11 18:13:26 +01:00 |
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