Louis
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5c564e4b3b
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Fix variable attribution
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2025-12-22 15:27:14 +01:00 |
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Louis
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6aed2e2dfe
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Add sge script
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2025-12-22 15:19:18 +01:00 |
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Louis
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5e8644493e
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Handling arguments and saving
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2025-12-22 15:17:37 +01:00 |
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Louis
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0d45da0316
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Parsing args for max and setting ncores to 64
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2025-12-22 14:40:51 +01:00 |
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Louis
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32707e2e49
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Drafting for computational complexity tests
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2025-12-22 14:10:54 +01:00 |
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Louis
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0f10320fb5
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Adding sample biom data
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2025-12-22 14:10:28 +01:00 |
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Louis
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bfa58899f9
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Adding plots to check Poisson distribution for some sample phyloseq data
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2025-12-22 14:10:12 +01:00 |
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Louis
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18ca3a38eb
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Adding requirements and draft for using sparseBM package
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2025-12-22 14:09:39 +01:00 |
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Louis
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0c0ed4653c
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Written on disk otu_matrix.csv.zip
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2025-12-22 14:09:14 +01:00 |
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Louis
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9a26d88ecb
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Basic stats for OTU and compressing OTU matrix as file
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2025-12-22 14:08:45 +01:00 |
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Louis
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eca2c0198c
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First script for tree sampling
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2025-12-22 14:08:07 +01:00 |
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Louis
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354ee4d528
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Load full
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2025-11-14 10:52:29 +01:00 |
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Louis
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3570b94f49
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Extracting filewrite and moving libraries
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2025-10-17 16:48:23 +02:00 |
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Louis
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5c955a8478
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Beginning multipartite
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2025-10-17 16:47:54 +02:00 |
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Louis
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bf571317f4
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Create lbm per taxa level
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2025-10-17 16:47:41 +02:00 |
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Louis
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5cf922d69f
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Perform file existence check in load script
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2025-10-13 13:41:05 +02:00 |
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Louis
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ad91ae0ef1
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Removed unused variable
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2025-10-13 10:29:22 +02:00 |
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Louis
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47fe4de889
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Created a script to generate nice visuals for slides
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2025-10-13 10:26:20 +02:00 |
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Louis
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aa97a8f486
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Adding utils functions
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2025-10-13 10:26:01 +02:00 |
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Louis
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a6298fadcd
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Using new loading script in easy16s visu
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2025-10-13 10:25:50 +02:00 |
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Louis
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099a654a21
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Retrieved European data
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2025-10-13 10:25:19 +02:00 |
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Louis
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c952458363
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Extracting code to load Europe samples to its own script
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2025-10-13 10:25:10 +02:00 |
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Louis
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8bbfec9e49
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Add outfiles directory
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2025-09-27 12:03:54 +02:00 |
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Louis
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aa824b130b
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Added easy16s visualization
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2025-08-17 17:25:17 +02:00 |
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Louis
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217c3ba05d
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sqdf
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2025-05-19 12:17:52 +02:00 |
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Louis
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a74aa46788
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Adding colSBM script
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2025-05-19 12:10:51 +02:00 |
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Louis
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6bb74565b6
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Updating data to 1.1.0 and adding full list of matrices and full supinfo
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2025-05-19 11:21:26 +02:00 |
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lacoste louis
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2450e11f7a
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[ci skip] Rendered README.md after changes
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2025-05-16 09:09:05 +00:00 |
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Louis
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a509dd9064
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Fixing wrong title
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2025-05-16 11:08:30 +02:00 |
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lacoste louis
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fc949335cd
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[ci skip] Rendered README.md after changes
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2025-05-16 08:58:39 +00:00 |
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Louis
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b430b939b6
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Update README
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2025-05-16 10:57:44 +02:00 |
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Louis
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de79515e59
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CI work
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2025-05-16 10:56:53 +02:00 |
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Louis
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6847e5ca63
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Adding qmd modifications
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2025-05-15 23:01:25 +02:00 |
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Louis
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0289ac3f8a
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adding ci
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2025-05-15 23:00:38 +02:00 |
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Louis
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48938aa724
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adding manual possibility
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2025-05-15 22:58:46 +02:00 |
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Louis
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f9bc615433
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Adding config for git to work on ssh
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2025-05-15 22:57:41 +02:00 |
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Louis
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4029c3768c
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Fix name and description
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2025-05-15 22:45:34 +02:00 |
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Louis
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2f6775e6ed
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Discarding second job with rules
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2025-05-15 22:44:28 +02:00 |
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Louis
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be6a23c004
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Fixing condition
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2025-05-15 22:42:52 +02:00 |
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lacoste louis
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2fd95cf65f
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Update .gitlab-ci.yml file
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2025-05-15 22:41:47 +02:00 |
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Louis
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67b9406818
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Adding rules to prevent running CI for nothing
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2025-05-15 22:41:13 +02:00 |
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Louis
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e56210439b
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Fixing quarto image
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2025-05-15 22:35:42 +02:00 |
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Louis
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9c9a22f1bc
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Making it work
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2025-05-15 22:35:00 +02:00 |
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Louis
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b6b12cd545
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Adding ci
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2025-05-15 22:24:41 +02:00 |
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Louis
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6c27286fa7
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Ajouts des données compressées
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2025-05-15 22:12:48 +02:00 |
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Louis
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7783c3de83
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Ajout script pour récupération données
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2025-05-15 22:12:34 +02:00 |
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Louis
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86d902cca9
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Adding the data retrieval
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2025-05-15 17:36:26 +02:00 |
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Louis
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9ae154121d
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CI to complete
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2025-05-15 17:34:05 +02:00 |
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Louis
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d73261586c
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Init repo
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2025-05-15 17:30:27 +02:00 |
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