Louis
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9995e60b20
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Begin adding matching graph in multipartite
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2026-02-24 14:51:37 +01:00 |
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Louis
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de4984c2c0
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Fixing regex
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2026-02-24 14:35:46 +01:00 |
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Louis
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96db7c5169
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Code for the multipartite
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2026-02-24 14:30:42 +01:00 |
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Louis
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e6c38905b3
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Fixing merge lbm seq
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2026-02-24 11:30:54 +01:00 |
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Louis
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88024bd343
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The real fix on save_dir creation
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2026-02-24 09:43:28 +01:00 |
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Louis
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a8bdeecb3a
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fix save path
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2026-02-23 14:07:18 +01:00 |
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Louis
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4d5415bbf4
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fix
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2026-02-23 14:05:52 +01:00 |
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Louis
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d618e1b5d7
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Add sge
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2026-02-23 14:04:24 +01:00 |
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Louis
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3a1c84443c
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BM correct sampling
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2026-02-23 14:01:35 +01:00 |
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Louis
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be7453fb9d
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For merging lbm-seq results
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2026-02-23 11:17:58 +01:00 |
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Louis
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e7f41d56f7
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Renaming biom data
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2026-02-23 11:17:41 +01:00 |
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Louis
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97b4a43597
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Usage of Blockmodels with poisson covariates to correct sequencing effort
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2026-02-19 10:40:01 +01:00 |
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Louis
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6fa32f2157
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Multipartite fungus tree with all dist matrix
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2026-02-19 10:39:36 +01:00 |
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Louis
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65e305e297
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Update stats panels with sequencing effort
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2026-02-19 10:39:15 +01:00 |
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Louis
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29728d8205
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Using GREMLINS from sbm
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2026-02-16 15:58:01 +01:00 |
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Louis
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c13fe8bf3e
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Commentaires sur les différents multipartites
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2026-02-16 13:34:43 +01:00 |
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e2819c5607
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Adding multiple models using dev GREMLINS
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2026-02-11 21:41:50 +01:00 |
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Louis
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09bcd00d6a
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Adding Fungus Tree data
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2026-02-11 17:36:50 +01:00 |
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Louis
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40068f8d00
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Cleaner implementation of benchmark lbm seq
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2026-02-10 11:27:05 +01:00 |
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Louis
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20d26e8634
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Working on LBM seq analysis
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2026-02-09 17:50:07 +01:00 |
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Louis
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691ad05b25
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Add lbm_seq_data
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2026-02-09 17:49:46 +01:00 |
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Louis
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3477c6e123
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Fixing str_split
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2026-02-09 15:53:17 +01:00 |
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Louis
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5f922c1453
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Adding ARI and ICL compute
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2026-02-09 15:53:01 +01:00 |
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Louis
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819d4328c0
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Modif analysis
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2026-02-02 16:34:05 +01:00 |
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Louis
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1fc536e0f0
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Analysing chaillou
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2026-02-02 09:34:11 +01:00 |
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ec095c69b5
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Adding chaillou results
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2026-02-02 09:33:18 +01:00 |
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Louis
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27bfabed06
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embedding resources
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2026-02-02 09:27:58 +01:00 |
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Louis
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ff0e27eb69
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LBMSEQ benchmark : Changing data and save path
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2026-02-01 19:28:32 +01:00 |
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40e1b9386c
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Add script to copy results from tmp dirs
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2026-01-30 14:37:50 +01:00 |
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d65dc24b3b
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Add final data
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2026-01-30 14:37:02 +01:00 |
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Louis
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dcff0d857b
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Ignoring tmp
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2026-01-30 14:36:25 +01:00 |
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Louis
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96c5662051
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Ignoring tmp in results
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2026-01-30 14:35:42 +01:00 |
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Louis
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cb7f459341
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Replacing R script by qmd
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2026-01-30 14:33:49 +01:00 |
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Louis
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3a90551f68
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Adding more to analysis
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2026-01-29 15:08:31 +01:00 |
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7723128f93
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Adding new reps
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2026-01-29 14:52:34 +01:00 |
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Louis
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9f589a1fdc
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Graph for time and size of OTUs
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2026-01-29 10:37:58 +01:00 |
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Louis
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2fc1cf4e65
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lbm on phyloseq
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2026-01-28 15:55:17 +01:00 |
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Louis
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05e9bca613
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Analysis for increasing size
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2026-01-28 15:55:17 +01:00 |
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Louis
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9abde593fd
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Stats panel
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2026-01-28 15:55:17 +01:00 |
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Louis
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1fe1656700
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Autosave tests
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2026-01-28 15:55:17 +01:00 |
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d5f1620361
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Adding first results for LBM seq
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2026-01-28 15:32:58 +01:00 |
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Louis
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0ce0338111
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Adding cores transmission mechanism for the R script
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2026-01-27 10:20:19 +01:00 |
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Louis
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2443c49694
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Using long.q and 128 cores
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2026-01-27 09:59:10 +01:00 |
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Louis
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6d6312c5f6
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Update SGE script
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2026-01-27 09:55:56 +01:00 |
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Louis
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049e09bb26
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Using autosave
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2026-01-27 09:54:29 +01:00 |
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Louis
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d46e7e8913
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Adding autosave capabilities
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2026-01-27 09:52:03 +01:00 |
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Louis
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e236b687ca
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Adding script to run benchmarks for LBM Seq
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2026-01-23 17:03:10 +01:00 |
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Louis
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df319af88d
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Adding defaults to bm utils
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2026-01-23 17:02:27 +01:00 |
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Louis
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e53e3740f6
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Fix a typo 'the_data' to 'phylo_data'
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2026-01-23 15:30:33 +01:00 |
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Louis
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d7919e3098
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Extracting sequential taxo function to utils-bm-seq.R
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2026-01-23 15:30:11 +01:00 |
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