Louis
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e236b687ca
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Adding script to run benchmarks for LBM Seq
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2026-01-23 17:03:10 +01:00 |
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Louis
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df319af88d
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Adding defaults to bm utils
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2026-01-23 17:02:27 +01:00 |
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Louis
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e53e3740f6
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Fix a typo 'the_data' to 'phylo_data'
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2026-01-23 15:30:33 +01:00 |
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Louis
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d7919e3098
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Extracting sequential taxo function to utils-bm-seq.R
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2026-01-23 15:30:11 +01:00 |
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Louis
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1df7268419
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First draft of working init of LBM sequential
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2026-01-23 13:44:59 +01:00 |
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Louis
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14adda1a36
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Working sequential LBM for a given Q
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2026-01-19 17:10:59 +01:00 |
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Louis
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3095f64b99
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Adding LBM sequential first draft
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2026-01-16 15:41:54 +01:00 |
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Louis
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f5e6e8f05c
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Added tau propagation
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2026-01-16 15:41:16 +01:00 |
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Louis
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542d9cd271
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Add a qmd for stats panel
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2026-01-14 16:48:53 +01:00 |
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Louis
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58b4dce83b
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utils: add collapse to merge otu by taxonomy
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2026-01-14 16:48:43 +01:00 |
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5ef2703efe
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Adding results for increasing size time for bernoulli emission
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2026-01-05 10:18:10 +01:00 |
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Louis
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be8f6d000d
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Use difftime to stabilize units
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2025-12-23 13:15:46 +01:00 |
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Louis
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b2c8ac222b
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Add analysis for increasing
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2025-12-23 13:15:35 +01:00 |
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b1fef82630
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Adding sbm results for increasing n2
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2025-12-23 13:03:04 +01:00 |
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Louis
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eb1a4e69ac
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Fix incorrect time and add recursive dir creation
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2025-12-22 15:44:23 +01:00 |
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Louis
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3aac79d151
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Creating results dir if doesnt exists
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2025-12-22 15:39:01 +01:00 |
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Louis
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8afd913289
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Logs to logs dir
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2025-12-22 15:38:48 +01:00 |
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Louis
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cc277dab37
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setting correct out list
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2025-12-22 15:31:32 +01:00 |
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Louis
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76e60b3202
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Handling 0 case for min and max
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2025-12-22 15:29:50 +01:00 |
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Louis
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3fc242b0b2
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Logging to specific files
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2025-12-22 15:28:50 +01:00 |
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Louis
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5c564e4b3b
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Fix variable attribution
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2025-12-22 15:27:14 +01:00 |
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Louis
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6aed2e2dfe
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Add sge script
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2025-12-22 15:19:18 +01:00 |
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Louis
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5e8644493e
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Handling arguments and saving
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2025-12-22 15:17:37 +01:00 |
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Louis
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0d45da0316
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Parsing args for max and setting ncores to 64
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2025-12-22 14:40:51 +01:00 |
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Louis
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32707e2e49
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Drafting for computational complexity tests
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2025-12-22 14:10:54 +01:00 |
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Louis
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0f10320fb5
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Adding sample biom data
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2025-12-22 14:10:28 +01:00 |
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Louis
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bfa58899f9
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Adding plots to check Poisson distribution for some sample phyloseq data
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2025-12-22 14:10:12 +01:00 |
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Louis
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18ca3a38eb
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Adding requirements and draft for using sparseBM package
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2025-12-22 14:09:39 +01:00 |
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Louis
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0c0ed4653c
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Written on disk otu_matrix.csv.zip
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2025-12-22 14:09:14 +01:00 |
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Louis
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9a26d88ecb
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Basic stats for OTU and compressing OTU matrix as file
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2025-12-22 14:08:45 +01:00 |
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Louis
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eca2c0198c
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First script for tree sampling
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2025-12-22 14:08:07 +01:00 |
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Louis
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354ee4d528
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Load full
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2025-11-14 10:52:29 +01:00 |
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Louis
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3570b94f49
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Extracting filewrite and moving libraries
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2025-10-17 16:48:23 +02:00 |
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Louis
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5c955a8478
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Beginning multipartite
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2025-10-17 16:47:54 +02:00 |
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Louis
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bf571317f4
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Create lbm per taxa level
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2025-10-17 16:47:41 +02:00 |
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Louis
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5cf922d69f
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Perform file existence check in load script
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2025-10-13 13:41:05 +02:00 |
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Louis
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ad91ae0ef1
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Removed unused variable
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2025-10-13 10:29:22 +02:00 |
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Louis
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47fe4de889
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Created a script to generate nice visuals for slides
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2025-10-13 10:26:20 +02:00 |
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Louis
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aa97a8f486
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Adding utils functions
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2025-10-13 10:26:01 +02:00 |
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Louis
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a6298fadcd
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Using new loading script in easy16s visu
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2025-10-13 10:25:50 +02:00 |
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Louis
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099a654a21
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Retrieved European data
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2025-10-13 10:25:19 +02:00 |
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Louis
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c952458363
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Extracting code to load Europe samples to its own script
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2025-10-13 10:25:10 +02:00 |
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Louis
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8bbfec9e49
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Add outfiles directory
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2025-09-27 12:03:54 +02:00 |
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Louis
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aa824b130b
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Added easy16s visualization
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2025-08-17 17:25:17 +02:00 |
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Louis
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217c3ba05d
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sqdf
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2025-05-19 12:17:52 +02:00 |
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Louis
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a74aa46788
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Adding colSBM script
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2025-05-19 12:10:51 +02:00 |
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Louis
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6bb74565b6
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Updating data to 1.1.0 and adding full list of matrices and full supinfo
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2025-05-19 11:21:26 +02:00 |
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lacoste louis
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2450e11f7a
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[ci skip] Rendered README.md after changes
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2025-05-16 09:09:05 +00:00 |
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Louis
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a509dd9064
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Fixing wrong title
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2025-05-16 11:08:30 +02:00 |
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lacoste louis
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fc949335cd
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[ci skip] Rendered README.md after changes
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2025-05-16 08:58:39 +00:00 |
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