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Human Microbiome Compendium

This repository will host the code for my PhD work on data from the Human Microbiome Compendium detailled in Abdill et al. (2025).

The folder data contain the networks as edgelists and the projects metadata.

Abdill, Richard J., Samantha P. Graham, Vincent Rubinetti, Mansooreh Ahmadian, Parker Hicks, Ashwin Chetty, Daniel McDonald, et al. 2025. “Integration of 168,000 Samples Reveals Global Patterns of the Human Gut Microbiome.” Cell 188 (4): 1100–1118.e17. https://doi.org/10.1016/j.cell.2024.12.017.