polarolouis/human-microbiome-compendium
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Analysing chaillou

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Louis 2026-02-02 09:33:32 +01:00
parent ec095c69b5
commit 1fc536e0f0
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analysis_benchmark_lbm_seq.qmd
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@ -11,7 +11,8 @@ library(tidyverse)
library(phyloseq) library(phyloseq)
library(biomformat) library(biomformat)
source("utils.R") source("utils.R")
the_data <- import_biom("data/mach/kinetic.biom")
the_data <- import_biom("data/chaillou/chaillou.biom")
per_taxa_networks <- collapse_otu_at_taxo(the_data) per_taxa_networks <- collapse_otu_at_taxo(the_data)
otu_df <- sapply(per_taxa_networks, nrow) %>% otu_df <- sapply(per_taxa_networks, nrow) %>%
data.frame() %>% data.frame() %>%

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analysis_benchmark_lbm_seq.html → analysis_benchmark_lbm_seq_kinetic.html
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